iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115589

Ensembl Protein ID

ENSSSCP00000026572.1

UniProt Accession

I3LR40; I3LR40_PIG

Genbank Protein ID

ENSSSCP00000026572

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

FP565312

Gene Name

SEH1L

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000030252.1	ENSSSCT00000023051.1	ENSSSCP00000026572.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.90e-16	58.8	241	270

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWD 29
           H++ v+ +++  ++t l+s++dDg +++W 
   Q: 241  HNSQVWRVSWniTGTVLASSGDDGCVRLWK 270
           9**********9889**************7 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

VWDKSESGDW HCTASWKTHS GSVWRVTWAH PEFGQVLASC SFDRTAAVWE EIVGESNDKL 60
RGQSHWVKRT TLVDSRTSVT DVKFAPKHMG LMLATCSADG IVRIYEAPDV MNLSQWSLQH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATCTTTTTT TCTTATAGGT CTGGGACAAA AGTGAAAGTG GGGATTGGCA TTGCACTGCT 60
AGCTGGAAGG TTAGTATTTA TTTTTACAGT GATTTAAAGA AATTGAAACA TTTACTATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0061700--C:GATOR2 complex
GO:0000776--C:kinetochore
GO:0031080--C:nuclear pore outer ring
GO:0051315--P:attachment of mitotic spindle microtubules to kinetochore
GO:0034629--P:cellular protein complex localization
GO:0034198--P:cellular response to amino acid starvation
GO:0002534--P:cytokine production involved in inflammatory response
GO:0050830--P:defense response to Gram-positive bacterium
GO:0006999--P:nuclear pore organization
GO:1904263--P:positive regulation of TORC1 signaling

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001926	Ailuropoda melanoleuca	97.18	5.00e-157	546.00
IUUC-Apl-003654	Anas platyrhynchos	92.21	8.00e-168	582.00
IUUC-Aca-004378	Anolis carolinensis	89.13	2.00e-164	570.00
IUUC-Ath-007107	Arabidopsis thaliana	25.70	3.00e-27	115.00
IUUC-Ago-007816	Ashbya gossypii	31.99	6.00e-39	154.00
IUUC-Ame-011945	Astyanax mexicanus	83.90	7.00e-149	519.00
IUUC-Bta-013306	Bos taurus	95.37	8.00e-164	569.00
IUUC-Bdi-014594	Brachypodium distachyon	28.67	2.00e-31	129.00
IUUC-Bol-016565	Brassica oleracea	26.06	2.00e-27	116.00
IUUC-Bra-017831	Brassica rapa	26.06	2.00e-27	116.00
IUUC-Cel-018235	Caenorhabditis elegans	39.86	2.00e-62	232.00
IUUC-Cja-018849	Callithrix jacchus	96.26	1.00e-163	568.00
IUUC-Cfa-020841	Canis familiaris	96.73	2.00e-153	538.00
IUUC-Cpo-021379	Cavia porcellus	95.06	2.00e-163	568.00
IUUC-Csa-023900	Chlorocebus sabaeus	96.57	3.00e-162	564.00
IUUC-Cho-024660	Choloepus hoffmanni	96.87	1.00e-175	608.00
IUUC-Cin-025471	Ciona intestinalis	53.75	5.00e-89	320.00
IUUC-Csv-026242	Ciona savignyi	58.90	7.00e-74	269.00
IUUC-Dre-028068	Danio rerio	81.73	1.00e-157	548.00
IUUC-Dno-029981	Dasypus novemcinctus	89.20	4.00e-148	517.00
IUUC-Dme-031763	Drosophila melanogaster	56.16	6.00e-95	340.00
IUUC-Ete-032243	Echinops telfairi	60.26	3.00e-94	338.00
IUUC-Eca-033425	Equus caballus	95.68	2.00e-163	567.00
IUUC-Eeu-035119	Erinaceus europaeus	76.97	1.00e-115	409.00
IUUC-Fca-036520	Felis catus	96.43	2.00e-170	591.00
IUUC-Fal-037234	Ficedula albicollis	92.50	1.00e-170	594.00
IUUC-Gmo-039013	Gadus morhua	84.16	7.00e-153	533.00
IUUC-Gga-041059	Gallus gallus	92.52	1.00e-168	585.00
IUUC-Gac-041337	Gasterosteus aculeatus	83.85	4.00e-149	520.00
IUUC-Gma-044300	Glycine max	27.54	3.00e-29	122.00
IUUC-Ggo-044944	Gorilla gorilla	95.95	7.00e-176	609.00
IUUC-Hsa-046038	Homo sapiens	95.64	2.00e-175	608.00
IUUC-Hvu-047455	Hordeum vulgare	29.55	1.00e-31	129.00
IUUC-Itr-048858	Ictidomys tridecemlineatus	96.26	2.00e-162	564.00
IUUC-Kpa-049201	Komagataella pastoris	34.17	2.00e-38	152.00
IUUC-Lch-050466	Latimeria chalumnae	76.96	1.00e-153	535.00
IUUC-Lpe-051064	Leersia perrieri	30.24	3.00e-32	131.00
IUUC-Loc-052773	Lepisosteus oculatus	76.67	6.00e-150	523.00
IUUC-Laf-053409	Loxodonta africana	96.60	9.00e-166	575.00
IUUC-Meu-055958	Macropus eugenii	69.57	2.00e-121	428.00
IUUC-Mtr-057876	Medicago truncatula	28.26	1.00e-28	120.00
IUUC-Mga-059348	Meleagris gallopavo	92.00	2.00e-169	587.00
IUUC-Mmr-060977	Microcebus murinus	98.06	3.00e-112	397.00
IUUC-Mdo-061806	Monodelphis domestica	93.85	7.00e-174	602.00
IUUC-Mmu-064328	Mus musculus	95.06	2.00e-172	598.00
IUUC-Mac-064960	Musa acuminata	31.25	3.00e-28	119.00
IUUC-Mpu-066873	Mustela putorius furo	97.89	7.00e-158	549.00
IUUC-Mlu-067563	Myotis lucifugus	88.89	1.00e-161	561.00
IUUC-Nfi-068360	Neosartorya fischeri	32.35	6.00e-28	117.00
IUUC-Nle-068977	Nomascus leucogenys	95.99	3.00e-178	617.00
IUUC-Opr-070773	Ochotona princeps	63.05	1.00e-85	309.00
IUUC-Ont-072644	Oreochromis niloticus	84.47	3.00e-153	534.00
IUUC-Oan-073098	Ornithorhynchus anatinus	93.85	2.00e-163	567.00
IUUC-Ocu-073911	Oryctolagus cuniculus	96.57	4.00e-177	613.00
IUUC-Obr-076089	Oryza brachyantha	29.21	5.00e-32	130.00
IUUC-Ogl-077279	Oryza glaberrima	28.32	4.00e-30	124.00
IUUC-Oin-079385	Oryza indica	28.32	1.00e-28	120.00
IUUC-Ome-081809	Oryza meridionalis	28.82	9.00e-30	125.00
IUUC-Oru-084801	Oryza rufipogon	28.32	2.00e-30	125.00
IUUC-Osa-085790	Oryza sativa	28.32	4.00e-30	124.00
IUUC-Ola-087096	Oryzias latipes	82.87	2.00e-147	514.00
IUUC-Oga-088798	Otolemur garnettii	96.57	2.00e-177	614.00
IUUC-Oar-090298	Ovis aries	95.33	6.00e-163	569.00
IUUC-Ptr-091074	Pan troglodytes	95.68	3.00e-178	617.00
IUUC-Pan-092013	Papio anubis	98.61	6.00e-119	419.00
IUUC-Psi-093508	Pelodiscus sinensis	91.36	8.00e-170	589.00
IUUC-Pma-094288	Petromyzon marinus	84.39	2.00e-84	304.00
IUUC-Ppa-095228	Physcomitrella patens	31.93	1.00e-36	146.00
IUUC-Pfo-096384	Poecilia formosa	83.54	2.00e-151	528.00
IUUC-Pab-098629	Pongo abelii	95.99	2.00e-178	617.00
IUUC-Pop-099015	Populus trichocarpa	28.32	1.00e-29	123.00
IUUC-Pca-100322	Procavia capensis	71.34	9.00e-108	383.00
IUUC-Ppe-101303	Prunus persica	27.60	4.00e-30	125.00
IUUC-Pva-102861	Pteropus vampyrus	95.95	3.00e-161	560.00
IUUC-Rno-104895	Rattus norvegicus	94.70	0.00e+00	646.00
IUUC-Sce-106420	Saccharomyces cerevisiae	32.70	2.00e-44	172.00
IUUC-Sha-106829	Sarcophilus harrisii	93.85	5.00e-174	603.00
IUUC-Sja-107923	Schizosaccharomyces japonicus	38.46	8.00e-53	200.00
IUUC-Spo-108184	Schizosaccharomyces pombe	37.09	2.00e-50	192.00
IUUC-Smo-109282	Selaginella moellendorffii	35.25	2.00e-35	142.00
IUUC-Sit-110393	Setaria italica	30.38	5.00e-31	127.00
IUUC-Sly-111125	Solanum lycopersicum	28.52	6.00e-31	127.00
IUUC-Stu-112745	Solanum tuberosum	25.08	3.00e-27	115.00
IUUC-Sar-113279	Sorex araneus	96.26	2.00e-162	565.00
IUUC-Sbi-114110	Sorghum bicolor	30.34	1.00e-32	133.00
IUUC-Tgu-117523	Taeniopygia guttata	92.21	3.00e-168	584.00
IUUC-Tru-117985	Takifugu rubripes	85.62	4.00e-155	543.00
IUUC-Tsy-118913	Tarsius syrichta	96.05	2.00e-163	567.00
IUUC-Tni-120670	Tetraodon nigroviridis	84.57	1.00e-153	535.00
IUUC-Tae-122796	Triticum aestivum	29.35	9.00e-32	130.00
IUUC-Tur-126582	Triticum urartu	28.52	7.00e-29	121.00
IUUC-Tme-126885	Tuber melanosporum	34.30	6.00e-43	167.00
IUUC-Tbe-127344	Tupaia belangeri	74.45	1.00e-110	392.00
IUUC-Ttr-128347	Tursiops truncatus	96.26	5.00e-162	563.00
IUUC-Vpa-130656	Vicugna pacos	97.18	3.00e-157	547.00
IUUC-Vvi-131103	Vitis vinifera	27.05	7.00e-30	124.00
IUUC-Xtr-132736	Xenopus tropicalis	87.81	3.00e-160	557.00
IUUC-Xma-133678	Xiphophorus maculatus	83.54	2.00e-151	528.00
IUUC-Yli-134659	Yarrowia lipolytica	38.10	8.00e-50	190.00
IUUC-Zma-135774	Zea mays	30.24	3.00e-32	132.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence