iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099585

Ensembl Protein ID

POPTR_0009s06440.1

UniProt Accession

B9HNR0; B9HNR0_POPTR

Genbank Protein ID

EEE87997.1

Protein Name

PHD finger family protein

Genbank Nucleotide ID

CM000345

Gene Name

POPTRDRAFT_557789; POPTR_0009s06440g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s06440	POPTR_0009s06440.1	POPTR_0009s06440.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.50e-16	60.2	281	338

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedek..slveCekCrewfHpaClkls....veeelpnsekwiCpkCrs 53
           ++C+vC + ++d++   +v+C++C++w+H +C ++s     + ++ ++ ++ C  Cr 
   Q: 281  NYCPVCLKVYRDSEstPMVCCDICQRWVHCHCDGISdekyLQFQVDGNLQYQCATCRG 338
           79*********9988899******************76655555666666******85 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAFHVACPIT CRRICFCSLG FPRDLHSTKS KADFLFDVAR IDEFLKDPLG IRASREGTVL 60
VSAPKVVPVP APIPPTHSLE VVSARDREGD GGVVEDAFST QTKRVAIQRQ AAAAKASAEY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCTTTC ACGTAGCTTG CCCAATTACA TGGTCAGTAG TGGTATTATC TTCACAACTA 60
ATAACACCGA ACCCCCCTTC TGTCTTTACT TTTTCTTCTC TTTTATGTCT CTCTCGCGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS51292--ZF_RING_CH

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0009s06440g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001054	Aegilops tauschii	34.49	9.00e-79	287.00
IUUC-Aml-002367	Ailuropoda melanoleuca	33.15	2.00e-25	112.00
IUUC-Apl-003311	Anas platyrhynchos	31.94	1.00e-26	117.00
IUUC-Aca-004705	Anolis carolinensis	30.89	6.00e-24	108.00
IUUC-Cja-019138	Callithrix jacchus	32.84	1.00e-26	116.00
IUUC-Cpo-021459	Cavia porcellus	32.14	1.00e-27	120.00
IUUC-Csa-024216	Chlorocebus sabaeus	32.84	4.00e-26	114.00
IUUC-Cho-024652	Choloepus hoffmanni	35.11	7.00e-22	101.00
IUUC-Cne-026801	Cryptococcus neoformans	33.64	6.00e-13	69.30
IUUC-Dre-028110	Danio rerio	32.98	1.00e-26	117.00
IUUC-Dno-029583	Dasypus novemcinctus	34.24	3.00e-26	115.00
IUUC-Dme-031590	Drosophila melanogaster	29.81	2.00e-19	91.70
IUUC-Ete-032834	Echinops telfairi	31.63	1.00e-27	120.00
IUUC-Eca-034026	Equus caballus	34.24	9.00e-26	112.00
IUUC-Eeu-034687	Erinaceus europaeus	33.70	4.00e-26	114.00
IUUC-Fca-036311	Felis catus	33.15	1.00e-25	113.00
IUUC-Fal-037256	Ficedula albicollis	31.63	8.00e-28	120.00
IUUC-Gmo-039403	Gadus morhua	32.29	3.00e-25	112.00
IUUC-Gga-040828	Gallus gallus	31.63	2.00e-27	120.00
IUUC-Gac-041896	Gasterosteus aculeatus	32.29	2.00e-25	113.00
IUUC-Hsa-046988	Homo sapiens	32.84	5.00e-26	114.00
IUUC-Itr-048907	Ictidomys tridecemlineatus	33.33	2.00e-26	115.00
IUUC-Lch-050086	Latimeria chalumnae	31.94	1.00e-25	114.00
IUUC-Laf-053703	Loxodonta africana	33.70	1.00e-25	112.00
IUUC-Mcc-054782	Macaca mulatta	32.84	4.00e-26	114.00
IUUC-Meu-056046	Macropus eugenii	32.07	1.00e-23	106.00
IUUC-Mtr-058482	Medicago truncatula	54.12	0.00e+00	730.00
IUUC-Mga-059541	Meleagris gallopavo	31.94	9.00e-27	117.00
IUUC-Mmr-061316	Microcebus murinus	34.24	3.00e-26	115.00
IUUC-Mdo-063031	Monodelphis domestica	31.63	2.00e-27	119.00
IUUC-Mmu-063579	Mus musculus	33.17	4.00e-26	114.00
IUUC-Mac-064935	Musa acuminata	47.40	0.00e+00	660.00
IUUC-Mpu-066710	Mustela putorius furo	33.70	7.00e-26	114.00
IUUC-Mlu-067559	Myotis lucifugus	33.70	4.00e-26	114.00
IUUC-Nle-070085	Nomascus leucogenys	32.84	1.00e-25	113.00
IUUC-Opr-071148	Ochotona princeps	33.83	9.00e-28	120.00
IUUC-Ont-071626	Oreochromis niloticus	32.31	2.00e-25	112.00
IUUC-Oan-072945	Ornithorhynchus anatinus	31.94	1.00e-25	114.00
IUUC-Ocu-074475	Oryctolagus cuniculus	34.24	2.00e-26	115.00
IUUC-Ola-086609	Oryzias latipes	32.31	2.00e-25	112.00
IUUC-Oga-088140	Otolemur garnettii	32.84	5.00e-26	114.00
IUUC-Ptr-090902	Pan troglodytes	32.84	4.00e-26	114.00
IUUC-Pan-091930	Papio anubis	32.84	5.00e-26	114.00
IUUC-Psi-094059	Pelodiscus sinensis	31.63	1.00e-27	120.00
IUUC-Pma-094252	Petromyzon marinus	32.46	6.00e-21	97.10
IUUC-Ppa-095221	Physcomitrella patens	44.26	4.00e-106	378.00
IUUC-Pab-098262	Pongo abelii	31.63	2.00e-27	119.00
IUUC-Pca-100358	Procavia capensis	31.63	2.00e-27	119.00
IUUC-Pva-102634	Pteropus vampyrus	33.70	5.00e-26	114.00
IUUC-Rno-105870	Rattus norvegicus	33.17	4.00e-26	114.00
IUUC-Sha-107174	Sarcophilus harrisii	31.63	1.00e-27	120.00
IUUC-Smo-109624	Selaginella moellendorffii	41.72	8.00e-95	341.00
IUUC-Sar-113183	Sorex araneus	28.80	2.00e-17	86.70
IUUC-Ssc-115509	Sus scrofa	33.70	5.00e-26	114.00
IUUC-Tgu-116677	Taeniopygia guttata	31.94	1.00e-26	117.00
IUUC-Tru-118413	Takifugu rubripes	32.82	3.00e-26	115.00
IUUC-Tsy-118932	Tarsius syrichta	28.27	2.00e-17	87.00
IUUC-Tni-119794	Tetraodon nigroviridis	33.33	6.00e-27	116.00
IUUC-Tca-121624	Theobroma cacao	60.95	0.00e+00	926.00
IUUC-Tbe-127825	Tupaia belangeri	32.84	6.00e-26	114.00
IUUC-Ttr-128754	Tursiops truncatus	33.70	1.00e-25	113.00
IUUC-Uma-129445	Ustilago maydis	34.58	6.00e-12	66.60
IUUC-Vpa-130660	Vicugna pacos	33.15	4.00e-27	118.00
IUUC-Vvi-131236	Vitis vinifera	60.32	0.00e+00	758.00
IUUC-Xtr-132869	Xenopus tropicalis	32.16	5.00e-28	121.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence