iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Olu-087655

Ensembl Protein ID

ABO93780

UniProt Accession

A4RR16; A4RR16_OSTLU

Genbank Protein ID

ABO93780.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

CP000581

Gene Name

OSTLU_48514

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OSTLU_48514	ABO93780	ABO93780

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-33	110.9	183	224
UBD/Beta-Prp	1.20e-70	236.6	14	301

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l+sG+dD+  k+WD+ t  ++++
   Q: 183  GHEKGVNCVDYfagGDrPYLISGADDKLAKIWDYQTKSCVQT 224
           8********966*9888*******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdkl 109
           ++++++ v ++p +++++t  ++g + +wd++t  l++s++  e +v++ k++ ++++++tg++D++++v++++t++ v+ +++h+d+++s++++p++ ++
   Q: 14   RSDRVKGVEIHPTEPWILTNLYSGNVAIWDYETNALVKSFEVTELPVRTSKWIARKQWIATGADDMFLRVYNYNTSELVVGFEAHSDYIRSIAVHPTQPYV 114
           5788999********************************************************************************************** PP
   S: 110  vsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklw 207
           v+ s+d  i++wd+e ++    +++gh++ v++vv++p++ n ++s+slDrt+++W++ +  +  tl+g h++ v++++     ++++l+sg++d+  k+w
   Q: 115  VTCSDDMLIKLWDWERQWDCAMVFEGHSHYVMHVVFNPKDtNTFASASLDRTIKVWNVTSPVCNFTLEG-HEKGVNCVDyfAGGDRPYLISGADDKLAKIW 214
           ******************9988**********************************************9.*********6445556*************** PP
   S: 208  dlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
           d+qt++cv+tl+gh  nv+ v f+p+   +++gs+Dg++riW   +  l +tl++  ++v+++ +  +++++ v+ + d    ++k  +
   Q: 215  DYQTKSCVQTLEGHAHNVSAVSFHPELPVIITGSEDGTLRIWHQNTYRLENTLNYGLERVWAIGC--LKGSNSVAIGYDEGTVMFKIGR 301
           ******************************************99*********************..6666666666666677777655 PP

Organism

Ostreococcus lucimarinus

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPMRLDIKRK LVQRSDRVKG VEIHPTEPWI LTNLYSGNVA IWDYETNALV KSFEVTELPV 60
RTSKWIARKQ WIATGADDMF LRVYNYNTSE LVVGFEAHSD YIRSIAVHPT QPYVVTCSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGATGC GGTTGGACAT CAAGCGCAAG CTCGTGCAGC GGAGCGACCG GGTGAAGGGG 60
GTGGAGATAC ACCCCACGGA ACCGTGGATA CTGACGAATC TGTACTCGGG GAACGTGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

olu:OSTLU_48514

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000222	Aegilops tauschii	66.43	0.00e+00	815.00
IUUC-Aml-002154	Ailuropoda melanoleuca	59.75	0.00e+00	1049.00
IUUC-Atr-003090	Amborella trichopoda	63.33	0.00e+00	1089.00
IUUC-Apl-003976	Anas platyrhynchos	59.03	0.00e+00	1053.00
IUUC-Aca-004301	Anolis carolinensis	59.32	0.00e+00	1060.00
IUUC-Aly-006508	Arabidopsis lyrata	63.97	0.00e+00	1132.00
IUUC-Ath-007635	Arabidopsis thaliana	63.38	0.00e+00	1128.00
IUUC-Ago-007914	Ashbya gossypii	43.89	0.00e+00	708.00
IUUC-Acl-008237	Aspergillus clavatus	53.21	0.00e+00	898.00
IUUC-Afl-008535	Aspergillus flavus	49.94	0.00e+00	841.00
IUUC-Afu-008845	Aspergillus fumigatus	53.11	0.00e+00	889.00
IUUC-Ani-009135	Aspergillus nidulans	54.45	0.00e+00	873.00
IUUC-Ang-009654	Aspergillus niger	57.21	0.00e+00	796.00
IUUC-Aor-009939	Aspergillus oryzae	50.86	0.00e+00	902.00
IUUC-Ate-010355	Aspergillus terreus	52.69	0.00e+00	873.00
IUUC-Ame-010922	Astyanax mexicanus	54.12	0.00e+00	900.00
IUUC-Bgr-012249	Blumeria graminis	51.84	0.00e+00	865.00
IUUC-Bta-013579	Bos taurus	58.88	0.00e+00	911.00
IUUC-Bci-013866	Botrytis cinerea	53.44	0.00e+00	856.00
IUUC-Bdi-015046	Brachypodium distachyon	64.77	0.00e+00	1114.00
IUUC-Bol-016271	Brassica oleracea	65.54	0.00e+00	1142.00
IUUC-Bra-017758	Brassica rapa	65.38	0.00e+00	1134.00
IUUC-Cel-018387	Caenorhabditis elegans	54.63	0.00e+00	959.00
IUUC-Cja-019145	Callithrix jacchus	59.80	0.00e+00	1051.00
IUUC-Cfa-020564	Canis familiaris	59.80	0.00e+00	1051.00
IUUC-Cpo-022201	Cavia porcellus	59.75	0.00e+00	1048.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	63.44	0.00e+00	1049.00
IUUC-Csa-023383	Chlorocebus sabaeus	64.50	0.00e+00	809.00
IUUC-Cho-024454	Choloepus hoffmanni	56.19	0.00e+00	875.00
IUUC-Cin-025681	Ciona intestinalis	55.02	0.00e+00	964.00
IUUC-Csv-026012	Ciona savignyi	57.18	0.00e+00	939.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	49.88	0.00e+00	781.00
IUUC-Cne-026986	Cryptococcus neoformans	49.82	0.00e+00	832.00
IUUC-Cme-027219	Cyanidioschyzon merolae	47.33	0.00e+00	852.00
IUUC-Dre-027846	Danio rerio	59.39	0.00e+00	1053.00
IUUC-Dor-030462	Dipodomys ordii	56.31	0.00e+00	788.00
IUUC-Dse-031268	Dothistroma septosporum	51.87	0.00e+00	878.00
IUUC-Dme-031791	Drosophila melanogaster	55.10	0.00e+00	969.00
IUUC-Ete-033166	Echinops telfairi	57.78	0.00e+00	682.00
IUUC-Eca-034180	Equus caballus	57.95	0.00e+00	1007.00
IUUC-Eeu-035086	Erinaceus europaeus	46.84	4.00e-116	410.00
IUUC-Fca-036265	Felis catus	59.80	0.00e+00	1051.00
IUUC-Fal-037202	Ficedula albicollis	58.59	0.00e+00	1003.00
IUUC-Fox-037711	Fusarium oxysporum	53.50	0.00e+00	811.00
IUUC-Fso-038268	Fusarium solani	52.25	0.00e+00	807.00
IUUC-Gmo-039046	Gadus morhua	58.52	0.00e+00	1038.00
IUUC-Ggr-039863	Gaeumannomyces graminis	53.26	0.00e+00	850.00
IUUC-Gga-041112	Gallus gallus	59.08	0.00e+00	1053.00
IUUC-Gac-041733	Gasterosteus aculeatus	58.65	0.00e+00	1017.00
IUUC-Gma-044333	Glycine max	66.14	0.00e+00	1151.00
IUUC-Ggo-044984	Gorilla gorilla	59.80	0.00e+00	1051.00
IUUC-Hsa-046698	Homo sapiens	59.68	0.00e+00	1050.00
IUUC-Hvu-047669	Hordeum vulgare	73.73	6.00e-170	587.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	59.75	0.00e+00	1047.00
IUUC-Kpa-049265	Komagataella pastoris	50.75	0.00e+00	829.00
IUUC-Lch-050473	Latimeria chalumnae	59.09	0.00e+00	1046.00
IUUC-Lpe-051579	Leersia perrieri	63.27	0.00e+00	1118.00
IUUC-Loc-052675	Lepisosteus oculatus	57.01	0.00e+00	1058.00
IUUC-Lma-053218	Leptosphaeria maculans	51.29	0.00e+00	843.00
IUUC-Laf-053757	Loxodonta africana	59.48	0.00e+00	1041.00
IUUC-Mcc-054859	Macaca mulatta	59.80	0.00e+00	1051.00
IUUC-Meu-056174	Macropus eugenii	47.49	9.00e-97	345.00
IUUC-Mor-057264	Magnaporthe oryzae	54.52	0.00e+00	833.00
IUUC-Mpo-057538	Magnaporthe poae	53.26	0.00e+00	861.00
IUUC-Mtr-058618	Medicago truncatula	65.18	0.00e+00	1107.00
IUUC-Mla-058937	Melampsora laricipopulina	53.11	0.00e+00	861.00
IUUC-Mga-059875	Meleagris gallopavo	59.06	0.00e+00	1050.00
IUUC-Mvi-060240	Microbotryum violaceum	51.84	0.00e+00	861.00
IUUC-Mmr-061261	Microcebus murinus	59.80	0.00e+00	1051.00
IUUC-Mdo-062076	Monodelphis domestica	59.08	0.00e+00	1052.00
IUUC-Mmu-063324	Mus musculus	59.68	0.00e+00	1050.00
IUUC-Mac-064636	Musa acuminata	64.47	0.00e+00	1120.00
IUUC-Mpu-065961	Mustela putorius furo	59.80	0.00e+00	1051.00
IUUC-Mlu-067059	Myotis lucifugus	59.06	0.00e+00	1022.00
IUUC-Nfi-068277	Neosartorya fischeri	52.93	0.00e+00	881.00
IUUC-Ncr-068659	Neurospora crassa	51.71	0.00e+00	861.00
IUUC-Nle-069034	Nomascus leucogenys	59.80	0.00e+00	1051.00
IUUC-Opr-070334	Ochotona princeps	59.86	0.00e+00	948.00
IUUC-Ont-071563	Oreochromis niloticus	59.58	0.00e+00	1048.00
IUUC-Oan-073416	Ornithorhynchus anatinus	59.17	0.00e+00	989.00
IUUC-Ocu-074522	Oryctolagus cuniculus	59.93	0.00e+00	1050.00
IUUC-Oba-075760	Oryza barthii	63.48	0.00e+00	1103.00
IUUC-Obr-076163	Oryza brachyantha	62.61	0.00e+00	1135.00
IUUC-Ogl-077450	Oryza glaberrima	64.09	0.00e+00	1124.00
IUUC-Ogu-078994	Oryza glumaepatula	63.48	0.00e+00	1102.00
IUUC-Oin-079856	Oryza indica	62.14	0.00e+00	1113.00
IUUC-Olo-080731	Oryza longistaminata	62.65	0.00e+00	1086.00
IUUC-Ome-081762	Oryza meridionalis	59.15	0.00e+00	1025.00
IUUC-Oni-082324	Oryza nivara	63.48	0.00e+00	1102.00
IUUC-Opu-083400	Oryza punctata	60.31	0.00e+00	1098.00
IUUC-Oru-084829	Oryza rufipogon	63.48	0.00e+00	1102.00
IUUC-Osa-086026	Oryza sativa	64.33	0.00e+00	1129.00
IUUC-Ola-087245	Oryzias latipes	59.29	0.00e+00	1041.00
IUUC-Oga-088163	Otolemur garnettii	57.20	0.00e+00	993.00
IUUC-Oar-089842	Ovis aries	59.68	0.00e+00	1049.00
IUUC-Ptr-090501	Pan troglodytes	59.80	0.00e+00	1051.00
IUUC-Pan-092011	Papio anubis	59.80	0.00e+00	1051.00
IUUC-Psi-093308	Pelodiscus sinensis	59.32	0.00e+00	1053.00
IUUC-Pma-094695	Petromyzon marinus	55.80	0.00e+00	917.00
IUUC-Pno-094785	Phaeosphaeria nodorum	55.52	1.00e-102	365.00
IUUC-Ppa-095911	Physcomitrella patens	65.45	0.00e+00	1133.00
IUUC-Pfo-096587	Poecilia formosa	59.58	0.00e+00	1049.00
IUUC-Pab-097926	Pongo abelii	58.95	0.00e+00	992.00
IUUC-Pop-099634	Populus trichocarpa	63.89	0.00e+00	1139.00
IUUC-Pca-100965	Procavia capensis	58.64	0.00e+00	1011.00
IUUC-Ppe-101470	Prunus persica	64.27	0.00e+00	1147.00
IUUC-Pva-102451	Pteropus vampyrus	56.31	0.00e+00	794.00
IUUC-Pgr-103590	Puccinia graminis	53.07	0.00e+00	878.00
IUUC-Ptt-103868	Puccinia triticina	51.75	0.00e+00	886.00
IUUC-Pte-104274	Pyrenophora teres	52.93	0.00e+00	888.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	50.18	0.00e+00	833.00
IUUC-Rno-105979	Rattus norvegicus	50.82	0.00e+00	769.00
IUUC-Sce-106269	Saccharomyces cerevisiae	47.74	0.00e+00	750.00
IUUC-Sha-106905	Sarcophilus harrisii	59.08	0.00e+00	1052.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	45.96	0.00e+00	740.00
IUUC-Spo-108299	Schizosaccharomyces pombe	45.80	0.00e+00	763.00
IUUC-Smo-108695	Selaginella moellendorffii	64.94	0.00e+00	1101.00
IUUC-Sit-110239	Setaria italica	65.42	0.00e+00	1141.00
IUUC-Sly-111775	Solanum lycopersicum	62.26	0.00e+00	1139.00
IUUC-Stu-112906	Solanum tuberosum	63.15	0.00e+00	1028.00
IUUC-Sar-113472	Sorex araneus	55.83	0.00e+00	717.00
IUUC-Sbi-113886	Sorghum bicolor	66.71	0.00e+00	1132.00
IUUC-Sre-115040	Sporisorium reilianum	51.26	0.00e+00	875.00
IUUC-Ssc-115593	Sus scrofa	59.80	0.00e+00	1051.00
IUUC-Tgu-117239	Taeniopygia guttata	59.27	0.00e+00	1054.00
IUUC-Tru-118025	Takifugu rubripes	58.70	0.00e+00	1043.00
IUUC-Tsy-118824	Tarsius syrichta	55.33	0.00e+00	734.00
IUUC-Tni-120142	Tetraodon nigroviridis	59.41	0.00e+00	1038.00
IUUC-Tca-121613	Theobroma cacao	66.14	0.00e+00	1150.00
IUUC-Tre-122072	Trichoderma reesei	52.12	0.00e+00	854.00
IUUC-Tvi-122546	Trichoderma virens	52.42	0.00e+00	853.00
IUUC-Tae-125395	Triticum aestivum	63.10	0.00e+00	1135.00
IUUC-Tur-126283	Triticum urartu	56.15	0.00e+00	982.00
IUUC-Tme-127041	Tuber melanosporum	53.44	0.00e+00	883.00
IUUC-Tbe-127770	Tupaia belangeri	58.20	0.00e+00	835.00
IUUC-Ttr-129294	Tursiops truncatus	59.80	0.00e+00	1048.00
IUUC-Uma-129351	Ustilago maydis	49.76	0.00e+00	866.00
IUUC-Vda-129716	Verticillium dahliae	53.04	0.00e+00	896.00
IUUC-Vpa-130037	Vicugna pacos	47.93	1.00e-121	428.00
IUUC-Vvi-131689	Vitis vinifera	65.25	0.00e+00	1132.00
IUUC-Xtr-132633	Xenopus tropicalis	59.56	0.00e+00	1060.00
IUUC-Xma-133347	Xiphophorus maculatus	59.46	0.00e+00	1049.00
IUUC-Yli-134455	Yarrowia lipolytica	47.97	0.00e+00	754.00
IUUC-Zma-135867	Zea mays	63.74	0.00e+00	1140.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence