iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121447

Ensembl Protein ID

EOY33733

UniProt Accession

A0A061GWF2; A0A061GWF2_THECC

Genbank Protein ID

EOY33733.1

Protein Name

Damaged DNA binding 2

Genbank Nucleotide ID

CM001887

Gene Name

TCM_041629

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_041629	EOY33733	EOY33733

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-16	60.8	165	196

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd..tllvsGsdDgtikvWDl 30
           H+ +vt+l+f ++  ++l+sG   g++ vWD+
   Q: 165  HSRRVTSLEFhPTynHILLSGDKKGQLGVWDF 196
           999********6663557999999*******6 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MAPQTRRTAF PKVLIGRDSD YEQSSSEEEE EEEEEGGPPS EEDNENEEKM EDFKDAKRKG 60
KIPITISLKK VCKVCRRAGH EAGFKGATYI DCPMKPCFLC KMPGHTTMTC PHRVATEHGV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAACTTCCTA AAACCCCTCC TCGGCAGCAT CATGTCCTAA GGACAAACTT GTAAATTCGA 60
CAACACGTGT GCTCCCAATA CGATTGAAAC AAAGTCCGTT TGTATCCTCG TCTTTTTCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR033312--DDB2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001878--Znf_CCHC

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006281--P:DNA repair
GO:0010224--P:response to UV-B

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000470	Aegilops tauschii	69.07	0.00e+00	676.00
IUUC-Aml-002203	Ailuropoda melanoleuca	28.70	5.00e-33	134.00
IUUC-Atr-002957	Amborella trichopoda	77.12	0.00e+00	730.00
IUUC-Apl-003832	Anas platyrhynchos	32.42	3.00e-39	155.00
IUUC-Aca-004358	Anolis carolinensis	31.69	3.00e-39	155.00
IUUC-Aly-006296	Arabidopsis lyrata	72.86	0.00e+00	726.00
IUUC-Ath-007115	Arabidopsis thaliana	69.54	0.00e+00	727.00
IUUC-Ame-010817	Astyanax mexicanus	31.89	2.00e-39	156.00
IUUC-Bta-012914	Bos taurus	29.13	5.00e-36	144.00
IUUC-Bdi-014261	Brachypodium distachyon	69.44	0.00e+00	696.00
IUUC-Bol-015317	Brassica oleracea	76.15	0.00e+00	710.00
IUUC-Bra-016848	Brassica rapa	76.67	0.00e+00	708.00
IUUC-Cja-018967	Callithrix jacchus	29.13	2.00e-36	145.00
IUUC-Cfa-021238	Canis familiaris	29.00	3.00e-30	125.00
IUUC-Cpo-022063	Cavia porcellus	30.06	3.00e-35	142.00
IUUC-Csa-023382	Chlorocebus sabaeus	29.73	2.00e-36	145.00
IUUC-Cho-024931	Choloepus hoffmanni	33.33	6.00e-08	51.60
IUUC-Dre-028732	Danio rerio	30.09	1.00e-34	140.00
IUUC-Dor-030461	Dipodomys ordii	33.19	3.00e-29	122.00
IUUC-Ete-033038	Echinops telfairi	27.66	1.00e-30	126.00
IUUC-Eca-033772	Equus caballus	28.27	1.00e-33	136.00
IUUC-Fca-036095	Felis catus	27.96	3.00e-30	125.00
IUUC-Gmo-039683	Gadus morhua	32.72	6.00e-43	167.00
IUUC-Gga-040530	Gallus gallus	32.42	2.00e-40	159.00
IUUC-Gac-041517	Gasterosteus aculeatus	30.54	5.00e-36	144.00
IUUC-Gma-043378	Glycine max	76.65	0.00e+00	820.00
IUUC-Ggo-045364	Gorilla gorilla	29.73	2.00e-37	148.00
IUUC-Hsa-046354	Homo sapiens	29.73	2.00e-37	149.00
IUUC-Hvu-047151	Hordeum vulgare	71.08	6.00e-129	452.00
IUUC-Itr-048304	Ictidomys tridecemlineatus	30.93	1.00e-36	146.00
IUUC-Lpe-051256	Leersia perrieri	65.87	0.00e+00	652.00
IUUC-Loc-052398	Lepisosteus oculatus	30.18	3.00e-36	145.00
IUUC-Laf-053562	Loxodonta africana	29.13	2.00e-34	139.00
IUUC-Mcc-055197	Macaca mulatta	28.53	6.00e-31	127.00
IUUC-Meu-056151	Macropus eugenii	29.37	5.00e-30	123.00
IUUC-Mtr-057940	Medicago truncatula	76.82	0.00e+00	794.00
IUUC-Mga-059923	Meleagris gallopavo	33.94	2.00e-42	166.00
IUUC-Mvi-060555	Microbotryum violaceum	22.53	2.00e-15	76.60
IUUC-Mmr-061465	Microcebus murinus	29.02	1.00e-29	122.00
IUUC-Mdo-063063	Monodelphis domestica	30.12	8.00e-38	150.00
IUUC-Mmu-064294	Mus musculus	30.00	1.00e-36	146.00
IUUC-Mac-065598	Musa acuminata	73.42	0.00e+00	719.00
IUUC-Mpu-066831	Mustela putorius furo	28.88	2.00e-31	129.00
IUUC-Mlu-067222	Myotis lucifugus	29.55	9.00e-34	137.00
IUUC-Nle-069581	Nomascus leucogenys	29.73	3.00e-37	148.00
IUUC-Opr-070644	Ochotona princeps	29.94	2.00e-35	142.00
IUUC-Ont-072605	Oreochromis niloticus	30.42	1.00e-36	146.00
IUUC-Oan-072973	Ornithorhynchus anatinus	32.23	8.00e-38	150.00
IUUC-Ocu-074615	Oryctolagus cuniculus	30.03	4.00e-35	141.00
IUUC-Oba-075283	Oryza barthii	66.09	0.00e+00	629.00
IUUC-Obr-076605	Oryza brachyantha	69.39	0.00e+00	678.00
IUUC-Ogl-077512	Oryza glaberrima	67.10	0.00e+00	645.00
IUUC-Ogu-078329	Oryza glumaepatula	66.31	0.00e+00	629.00
IUUC-Oin-079980	Oryza indica	66.31	0.00e+00	628.00
IUUC-Olo-080516	Oryza longistaminata	68.72	1.00e-177	615.00
IUUC-Ome-081415	Oryza meridionalis	67.40	0.00e+00	640.00
IUUC-Oni-082985	Oryza nivara	66.31	0.00e+00	628.00
IUUC-Opu-084159	Oryza punctata	70.09	0.00e+00	671.00
IUUC-Oru-085137	Oryza rufipogon	67.39	0.00e+00	650.00
IUUC-Osa-085614	Oryza sativa	67.39	0.00e+00	650.00
IUUC-Ola-087044	Oryzias latipes	30.43	3.00e-39	155.00
IUUC-Oga-088274	Otolemur garnettii	29.73	1.00e-35	142.00
IUUC-Oar-089826	Ovis aries	29.13	8.00e-36	143.00
IUUC-Ptr-091631	Pan troglodytes	29.73	2.00e-37	149.00
IUUC-Pan-092535	Papio anubis	29.73	3.00e-37	148.00
IUUC-Psi-093815	Pelodiscus sinensis	31.82	1.00e-36	146.00
IUUC-Pma-094474	Petromyzon marinus	31.61	1.00e-36	145.00
IUUC-Ppa-095414	Physcomitrella patens	60.09	7.00e-171	593.00
IUUC-Pfo-096559	Poecilia formosa	31.75	5.00e-39	154.00
IUUC-Pab-098528	Pongo abelii	30.03	3.00e-37	148.00
IUUC-Pop-100064	Populus trichocarpa	75.89	0.00e+00	833.00
IUUC-Pca-100803	Procavia capensis	29.64	6.00e-36	144.00
IUUC-Ppe-101966	Prunus persica	78.57	0.00e+00	815.00
IUUC-Pva-103213	Pteropus vampyrus	29.13	1.00e-35	143.00
IUUC-Rno-105087	Rattus norvegicus	30.30	1.00e-37	149.00
IUUC-Sha-107466	Sarcophilus harrisii	31.83	2.00e-39	155.00
IUUC-Smo-108958	Selaginella moellendorffii	59.45	7.00e-165	572.00
IUUC-Sit-109968	Setaria italica	71.00	0.00e+00	652.00
IUUC-Sly-111495	Solanum lycopersicum	78.30	0.00e+00	754.00
IUUC-Sar-113272	Sorex araneus	28.83	5.00e-32	130.00
IUUC-Sbi-114706	Sorghum bicolor	65.16	3.00e-173	600.00
IUUC-Ssc-115437	Sus scrofa	28.83	1.00e-32	133.00
IUUC-Tgu-116602	Taeniopygia guttata	32.12	3.00e-39	155.00
IUUC-Tru-118698	Takifugu rubripes	33.43	7.00e-35	140.00
IUUC-Tsy-119027	Tarsius syrichta	29.97	8.00e-30	123.00
IUUC-Tni-119787	Tetraodon nigroviridis	31.68	1.00e-40	159.00
IUUC-Tae-123253	Triticum aestivum	70.14	0.00e+00	698.00
IUUC-Tur-126724	Triticum urartu	69.93	0.00e+00	694.00
IUUC-Tbe-127680	Tupaia belangeri	27.53	1.00e-24	106.00
IUUC-Vvi-131001	Vitis vinifera	76.03	0.00e+00	800.00
IUUC-Xtr-132266	Xenopus tropicalis	32.72	3.00e-43	168.00
IUUC-Xma-133034	Xiphophorus maculatus	30.47	5.00e-36	144.00
IUUC-Zma-135674	Zea mays	64.68	2.00e-175	607.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence