iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-12	46.7	496	527

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           +vt+++f  s+ +ll++G ++gt+ ++++ ++
   Q: 496  GVTSVDFsiSSpNLLAVGYHNGTVAIYNVQSN 527
           59*******777****************9775 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MPSSPTSTRK QTNFTASVSA QSRKSISFGN PKSTGGKGYA GANQSKIVAS RTMTFLPEMK 60
PAEKLNIASA KLVQVLDPRG VDVTPRPLYH PDPHAMPTKP SKLLTSQEGS MGSDYISSYS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTGCGGTC GCCATGACGC CCGGCAAACA TTCCTGAGCT GCTGAGGGGG CAGTTGGAGT 60
CCGGGCACCG CAGAACCGCT GGGGAAGGGG CTCCCAAGCC CTAATCTAAG AGTCGCCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0002244--P:hematopoietic progenitor cell differentiation

KEGG

rno:313417

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002359	Ailuropoda melanoleuca	72.92	0.00e+00	1097.00
IUUC-Apl-004037	Anas platyrhynchos	52.31	0.00e+00	771.00
IUUC-Aca-004686	Anolis carolinensis	54.74	0.00e+00	778.00
IUUC-Ame-010641	Astyanax mexicanus	44.50	2.00e-166	579.00
IUUC-Bta-012779	Bos taurus	72.60	0.00e+00	1120.00
IUUC-Cja-019217	Callithrix jacchus	73.80	0.00e+00	1139.00
IUUC-Cfa-020613	Canis familiaris	74.72	0.00e+00	1141.00
IUUC-Cpo-022374	Cavia porcellus	73.30	0.00e+00	1134.00
IUUC-Cre-022690	Chlamydomonas reinhardtii	40.12	7.00e-68	252.00
IUUC-Csa-023471	Chlorocebus sabaeus	73.37	0.00e+00	1147.00
IUUC-Cho-024485	Choloepus hoffmanni	63.72	0.00e+00	920.00
IUUC-Cin-025295	Ciona intestinalis	52.68	5.00e-140	491.00
IUUC-Csv-025888	Ciona savignyi	43.62	5.00e-165	574.00
IUUC-Dre-027657	Danio rerio	44.37	9.00e-177	613.00
IUUC-Dno-029422	Dasypus novemcinctus	66.54	0.00e+00	1010.00
IUUC-Ete-032340	Echinops telfairi	61.38	1.00e-110	394.00
IUUC-Eca-033418	Equus caballus	76.08	0.00e+00	1103.00
IUUC-Eeu-035088	Erinaceus europaeus	60.77	2.00e-142	499.00
IUUC-Fca-035471	Felis catus	73.40	0.00e+00	1092.00
IUUC-Fal-036908	Ficedula albicollis	49.26	7.00e-161	560.00
IUUC-Gmo-038672	Gadus morhua	36.91	1.00e-78	287.00
IUUC-Gga-040422	Gallus gallus	49.26	0.00e+00	710.00
IUUC-Gac-042448	Gasterosteus aculeatus	39.55	3.00e-146	512.00
IUUC-Ggo-045567	Gorilla gorilla	74.49	0.00e+00	1061.00
IUUC-Hsa-046857	Homo sapiens	73.92	0.00e+00	1154.00
IUUC-Itr-048176	Ictidomys tridecemlineatus	80.45	0.00e+00	786.00
IUUC-Lch-050496	Latimeria chalumnae	50.44	0.00e+00	743.00
IUUC-Loc-052759	Lepisosteus oculatus	55.21	0.00e+00	748.00
IUUC-Laf-053515	Loxodonta africana	74.75	0.00e+00	1172.00
IUUC-Mcc-054741	Macaca mulatta	73.80	0.00e+00	1163.00
IUUC-Meu-056698	Macropus eugenii	76.87	6.00e-137	481.00
IUUC-Mga-059689	Meleagris gallopavo	51.28	0.00e+00	717.00
IUUC-Mmr-061641	Microcebus murinus	67.09	0.00e+00	781.00
IUUC-Mdo-061968	Monodelphis domestica	61.33	0.00e+00	938.00
IUUC-Mmu-063908	Mus musculus	85.47	0.00e+00	1233.00
IUUC-Mpu-065957	Mustela putorius furo	73.34	0.00e+00	1081.00
IUUC-Mlu-067454	Myotis lucifugus	69.12	0.00e+00	1053.00
IUUC-Nle-069312	Nomascus leucogenys	74.42	0.00e+00	1166.00
IUUC-Opr-070363	Ochotona princeps	63.79	0.00e+00	960.00
IUUC-Ont-072322	Oreochromis niloticus	38.62	1.00e-142	500.00
IUUC-Oan-073666	Ornithorhynchus anatinus	58.79	0.00e+00	823.00
IUUC-Ocu-074719	Oryctolagus cuniculus	74.17	0.00e+00	1195.00
IUUC-Ola-087351	Oryzias latipes	44.16	2.00e-76	278.00
IUUC-Olu-087835	Ostreococcus lucimarinus	29.93	5.00e-39	155.00
IUUC-Oga-088476	Otolemur garnettii	68.95	0.00e+00	967.00
IUUC-Oar-089261	Ovis aries	73.87	0.00e+00	1112.00
IUUC-Pan-091774	Papio anubis	73.62	0.00e+00	1160.00
IUUC-Psi-093526	Pelodiscus sinensis	69.86	2.00e-162	566.00
IUUC-Pma-094755	Petromyzon marinus	49.27	3.00e-71	261.00
IUUC-Ppa-095355	Physcomitrella patens	50.32	2.00e-42	166.00
IUUC-Pfo-096510	Poecilia formosa	39.83	1.00e-134	473.00
IUUC-Pab-098218	Pongo abelii	74.62	0.00e+00	1147.00
IUUC-Pva-102551	Pteropus vampyrus	80.31	0.00e+00	633.00
IUUC-Sha-107552	Sarcophilus harrisii	61.66	0.00e+00	944.00
IUUC-Smo-109353	Selaginella moellendorffii	40.20	7.00e-65	240.00
IUUC-Sar-113136	Sorex araneus	64.31	0.00e+00	875.00
IUUC-Ssc-116203	Sus scrofa	75.34	0.00e+00	952.00
IUUC-Tgu-117141	Taeniopygia guttata	49.75	1.00e-173	603.00
IUUC-Tni-119670	Tetraodon nigroviridis	34.02	3.00e-99	355.00
IUUC-Tbe-127913	Tupaia belangeri	69.42	0.00e+00	857.00
IUUC-Ttr-128515	Tursiops truncatus	65.56	0.00e+00	986.00
IUUC-Vpa-130560	Vicugna pacos	74.02	2.00e-170	592.00
IUUC-Xtr-131755	Xenopus tropicalis	53.78	0.00e+00	765.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence