iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017218

Ensembl Protein ID

Bra039855.1-P

UniProt Accession

M4FFI1; M4FFI1_BRARP

Protein Name

Auxin-responsive protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra039855	Bra039855.1	Bra039855.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	1.80e-15	57.9	117	214

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 3    rvkvsykgeirsfaldlekpgkfedLlkavrt.lt.......................elknsevalkYeDedGDlvtlksDedldkavsllaskk 74
           +vkvs++g+++++++dl+ + ++++L +a+++ +                         ++ s++ + YeD+dGD++ l++D+++ ++++      
   Q: 117  FVKVSMDGAPYLRKVDLKMYKSYKELSDALAKmFSsftmgsygaqgmidfmneskvmdLVNSSDYVPSYEDKDGDWM-LVGDVPWPMFIE------ 205
           8*******************************62256699****************977777***************.************...... PP
   S: 75   sllrlliqk 83
           s++rl+i+k
   Q: 206  SCKRLRIMK 214
           ********8 PP

Organism

Brassica rapa

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MEQLINLKET ELCLGLPGGP DPVETPTKSC LRNKRGFSEI VELKLGLHST KEGSVDLNVA 60
GAPKEKTLHK DPSKPPAKAQ VVGWPPVRNY RKSVMTHQKC SEVEEASSDR GGGTVAFVKV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGCAGT TGATTAACCT AAAGGAAACG GAGCTCTGTC TTGGCCTCCC TGGAGGCCCA 60
GATCCCGTGG AGACTCCAAC CAAGTCATGC CTGAGGAACA AGAGAGGCTT CTCTGAGATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0010102--P:lateral root morphogenesis
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005852	Arabidopsis lyrata	84.21	2.00e-105	374.00
IUUC-Ath-006635	Arabidopsis thaliana	83.49	3.00e-100	357.00
IUUC-Bol-015682	Brassica oleracea	97.42	7.00e-134	468.00
IUUC-Mmu-063931	Mus musculus	33.33	1.40e+00	28.90
IUUC-Sar-113090	Sorex araneus	30.61	2.80e-01	30.40

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence