iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppe-101848

Ensembl Protein ID

EMJ16607

UniProt Accession

M5WS20; M5WS20_PRUPE

Genbank Protein ID

EMJ16607.1

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

KB639030

Gene Name

PRUPE_ppa005967mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PRUPE_ppa005967mg	EMJ16607	EMJ16607

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.10e-32	109.7	359	393
UBD/Beta-Prp	2.30e-41	142.4	262	425

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           Ht++vt++++   s  +l+s+s+Dg++++WDlrt 
   Q: 359  HTSWVTACKWhekSWFHLISASHDGKVMLWDLRTA 393
           **********9954377***************985 PP

UBD/Beta-Prp

   S: 82   stgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl...ktgkllrtltgg 178
           s g+ v++l gh++ v s+++ + ++++ s+s+d  ir w+ etg+ + +++ g+  + nc+ + +++  l+++G+ D ++++Wd     t   ++++++ 
   Q: 262  SEGEAVSSLVGHTQCVSSVKWPE-RETIYSASWDHSIRRWNAETGKDSLNIFCGK--ALNCLDIGGESsALVAAGGSDPILKIWDPrkpGTSAPVYQFSS- 358
           57899****************88.************************8777775..5**********9*****************88889999*****9. PP
   S: 179  htdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgs 245
           ht+ v+  ++++++ ++l+s+s+dg+v lwdl+t   +    +h+d  ++ + + ++e ++sg++D  
   Q: 359  HTSWVTACKWHEKSwFHLISASHDGKVMLWDLRTAWPLFVIDAHKDKALCADWW-RGETVLSGGADSK 425
           ************999***************************************.9999999999975 PP

Organism

Prunus persica

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDTDGNSGDA SRVVHVRFIT KLDRPFKVPN SSISVASNFT RFGLSSVVNN LIQTENPDWE 60
VEPFDFLING ELVRMSLENF LLAKGISAET ILEIEYIRAV VPRKEEEPSL HDDWVSAVDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACACGG ACGGAAATTC AGGAGACGCG TCGAGGGTGG TCCATGTGCG CTTCATCACG 60
AAGCTCGACC GTCCTTTCAA AGTCCCAAAT TCCTCCATTT CCGTCGCCTC CAATTTCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

pper:PRUPE_ppa005967mg

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	61.81	4.00e-165	573.00
IUUC-Aml-001997	Ailuropoda melanoleuca	36.61	2.00e-59	222.00
IUUC-Atr-002544	Amborella trichopoda	61.24	6.00e-158	549.00
IUUC-Apl-003981	Anas platyrhynchos	38.25	2.00e-60	224.00
IUUC-Aca-004370	Anolis carolinensis	36.92	7.00e-65	240.00
IUUC-Aly-006455	Arabidopsis lyrata	71.89	0.00e+00	675.00
IUUC-Ath-006669	Arabidopsis thaliana	72.81	0.00e+00	661.00
IUUC-Ago-007864	Ashbya gossypii	30.80	3.00e-48	185.00
IUUC-Acl-008177	Aspergillus clavatus	30.22	2.00e-43	169.00
IUUC-Afl-008617	Aspergillus flavus	30.84	2.00e-42	166.00
IUUC-Afu-008752	Aspergillus fumigatus	30.10	6.00e-41	160.00
IUUC-Ani-009136	Aspergillus nidulans	33.08	3.00e-45	174.00
IUUC-Ang-009701	Aspergillus niger	31.89	7.00e-42	164.00
IUUC-Aor-009884	Aspergillus oryzae	30.84	5.00e-43	167.00
IUUC-Ame-011432	Astyanax mexicanus	37.05	1.00e-68	252.00
IUUC-Bgr-012218	Blumeria graminis	28.76	2.00e-41	162.00
IUUC-Bta-012829	Bos taurus	34.86	3.00e-59	221.00
IUUC-Bci-013953	Botrytis cinerea	29.93	5.00e-38	151.00
IUUC-Bdi-014351	Brachypodium distachyon	62.99	2.00e-160	557.00
IUUC-Bol-016514	Brassica oleracea	68.91	1.00e-175	608.00
IUUC-Bra-016988	Brassica rapa	68.91	5.00e-176	609.00
IUUC-Cel-018569	Caenorhabditis elegans	25.06	1.00e-23	103.00
IUUC-Cja-019468	Callithrix jacchus	35.82	2.00e-57	215.00
IUUC-Cfa-020471	Canis familiaris	34.22	3.00e-56	211.00
IUUC-Cpo-022260	Cavia porcellus	35.58	7.00e-59	220.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	37.56	2.00e-64	238.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.58	3.00e-57	214.00
IUUC-Cho-024426	Choloepus hoffmanni	35.60	1.00e-44	172.00
IUUC-Cin-025789	Ciona intestinalis	30.31	3.00e-52	197.00
IUUC-Cne-027063	Cryptococcus neoformans	27.40	2.00e-29	122.00
IUUC-Dre-027907	Danio rerio	36.14	4.00e-68	250.00
IUUC-Dno-029225	Dasypus novemcinctus	35.10	8.00e-59	219.00
IUUC-Dor-031082	Dipodomys ordii	28.84	2.00e-35	142.00
IUUC-Dse-031308	Dothistroma septosporum	33.83	2.00e-50	192.00
IUUC-Dme-032189	Drosophila melanogaster	28.44	2.00e-44	172.00
IUUC-Ete-032247	Echinops telfairi	32.94	4.00e-51	194.00
IUUC-Eca-034285	Equus caballus	35.34	2.00e-59	222.00
IUUC-Eeu-035322	Erinaceus europaeus	31.17	3.00e-47	181.00
IUUC-Fca-036114	Felis catus	34.86	2.00e-58	218.00
IUUC-Fal-036891	Ficedula albicollis	37.65	1.00e-53	202.00
IUUC-Fox-037965	Fusarium oxysporum	25.52	7.00e-34	137.00
IUUC-Fso-038244	Fusarium solani	25.26	1.00e-32	133.00
IUUC-Gmo-039040	Gadus morhua	36.30	2.00e-68	252.00
IUUC-Ggr-040093	Gaeumannomyces graminis	27.46	7.00e-29	120.00
IUUC-Gga-040610	Gallus gallus	36.36	3.00e-62	231.00
IUUC-Gac-042117	Gasterosteus aculeatus	37.02	5.00e-67	247.00
IUUC-Gma-043756	Glycine max	71.00	0.00e+00	657.00
IUUC-Ggo-045179	Gorilla gorilla	35.58	3.00e-58	218.00
IUUC-Hsa-046114	Homo sapiens	35.58	2.00e-57	215.00
IUUC-Hvu-047331	Hordeum vulgare	63.07	4.00e-148	516.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	34.86	6.00e-59	220.00
IUUC-Kpa-049304	Komagataella pastoris	30.75	7.00e-49	187.00
IUUC-Lch-050655	Latimeria chalumnae	34.01	9.00e-46	176.00
IUUC-Lpe-051675	Leersia perrieri	61.06	2.00e-164	571.00
IUUC-Loc-052868	Lepisosteus oculatus	36.39	7.00e-67	246.00
IUUC-Lma-053258	Leptosphaeria maculans	31.77	6.00e-42	166.00
IUUC-Laf-053993	Loxodonta africana	34.52	2.00e-58	218.00
IUUC-Mcc-055128	Macaca mulatta	30.68	7.00e-36	143.00
IUUC-Meu-056501	Macropus eugenii	37.27	6.00e-50	190.00
IUUC-Mor-057114	Magnaporthe oryzae	29.08	2.00e-39	155.00
IUUC-Mtr-058367	Medicago truncatula	70.23	0.00e+00	627.00
IUUC-Mla-059107	Melampsora laricipopulina	26.87	8.00e-37	147.00
IUUC-Mga-059745	Meleagris gallopavo	36.27	1.00e-61	229.00
IUUC-Mvi-060362	Microbotryum violaceum	27.73	1.00e-33	136.00
IUUC-Mdo-062257	Monodelphis domestica	35.82	4.00e-64	237.00
IUUC-Mmu-063546	Mus musculus	34.38	2.00e-58	218.00
IUUC-Mac-065540	Musa acuminata	62.12	1.00e-163	568.00
IUUC-Mpu-066284	Mustela putorius furo	34.86	7.00e-59	220.00
IUUC-Mlu-067241	Myotis lucifugus	35.58	1.00e-59	223.00
IUUC-Nfi-068260	Neosartorya fischeri	31.07	2.00e-43	169.00
IUUC-Ncr-068719	Neurospora crassa	27.35	2.00e-34	139.00
IUUC-Nle-068981	Nomascus leucogenys	35.90	2.00e-57	215.00
IUUC-Opr-071218	Ochotona princeps	32.75	4.00e-54	204.00
IUUC-Ont-071646	Oreochromis niloticus	35.10	1.00e-62	232.00
IUUC-Oan-073453	Ornithorhynchus anatinus	36.58	4.00e-71	260.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.34	7.00e-60	223.00
IUUC-Oba-075712	Oryza barthii	51.97	3.00e-126	444.00
IUUC-Obr-076721	Oryza brachyantha	60.23	9.00e-163	565.00
IUUC-Ogl-077229	Oryza glaberrima	61.50	5.00e-165	572.00
IUUC-Ogu-078977	Oryza glumaepatula	51.97	1.00e-126	445.00
IUUC-Oin-079683	Oryza indica	61.50	7.00e-165	572.00
IUUC-Olo-080291	Oryza longistaminata	53.47	1.00e-90	325.00
IUUC-Ome-081834	Oryza meridionalis	62.15	2.00e-164	571.00
IUUC-Oni-082507	Oryza nivara	59.00	1.00e-154	538.00
IUUC-Opu-083396	Oryza punctata	60.69	5.00e-164	569.00
IUUC-Oru-085220	Oryza rufipogon	59.00	9.00e-155	538.00
IUUC-Osa-085767	Oryza sativa	61.50	7.00e-165	572.00
IUUC-Ola-087420	Oryzias latipes	34.29	8.00e-67	246.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.41	8.00e-61	226.00
IUUC-Oga-088264	Otolemur garnettii	35.47	5.00e-57	214.00
IUUC-Oar-089335	Ovis aries	34.86	1.00e-59	222.00
IUUC-Ptr-091320	Pan troglodytes	35.58	2.00e-57	215.00
IUUC-Pan-092833	Papio anubis	35.82	8.00e-58	216.00
IUUC-Psi-093504	Pelodiscus sinensis	34.84	8.00e-59	219.00
IUUC-Pma-094189	Petromyzon marinus	37.47	6.00e-65	240.00
IUUC-Pno-094929	Phaeosphaeria nodorum	31.53	3.00e-43	168.00
IUUC-Ppa-095429	Physcomitrella patens	48.96	1.00e-121	428.00
IUUC-Pfo-096337	Poecilia formosa	35.34	2.00e-67	248.00
IUUC-Pab-097571	Pongo abelii	35.58	2.00e-57	215.00
IUUC-Pop-099977	Populus trichocarpa	71.49	0.00e+00	656.00
IUUC-Pca-100394	Procavia capensis	34.24	9.00e-50	189.00
IUUC-Pva-102921	Pteropus vampyrus	32.74	3.00e-26	111.00
IUUC-Pgr-103637	Puccinia graminis	28.34	9.00e-40	157.00
IUUC-Ptt-103781	Puccinia triticina	28.66	1.00e-39	156.00
IUUC-Pte-104135	Pyrenophora teres	32.88	2.00e-41	163.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	32.52	4.00e-42	164.00
IUUC-Rno-105114	Rattus norvegicus	34.62	5.00e-59	221.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.26	2.00e-48	185.00
IUUC-Sha-107122	Sarcophilus harrisii	36.45	6.00e-62	230.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	26.67	1.00e-37	149.00
IUUC-Spo-108134	Schizosaccharomyces pombe	28.60	1.00e-37	150.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	31.46	1.00e-41	163.00
IUUC-Smo-108720	Selaginella moellendorffii	46.79	6.00e-114	403.00
IUUC-Sit-110311	Setaria italica	59.58	1.00e-157	548.00
IUUC-Sly-111023	Solanum lycopersicum	62.50	1.00e-167	582.00
IUUC-Stu-112778	Solanum tuberosum	69.25	8.00e-179	619.00
IUUC-Sar-113596	Sorex araneus	33.70	1.00e-44	173.00
IUUC-Sbi-114193	Sorghum bicolor	59.35	6.00e-154	536.00
IUUC-Sre-115002	Sporisorium reilianum	27.62	4.00e-18	85.10
IUUC-Ssc-116066	Sus scrofa	34.86	6.00e-59	220.00
IUUC-Tgu-117048	Taeniopygia guttata	37.43	6.00e-59	220.00
IUUC-Tsy-119573	Tarsius syrichta	24.70	3.00e-22	98.60
IUUC-Tni-119820	Tetraodon nigroviridis	36.30	1.00e-64	239.00
IUUC-Tca-121605	Theobroma cacao	72.64	0.00e+00	671.00
IUUC-Tre-121947	Trichoderma reesei	28.03	2.00e-36	146.00
IUUC-Tvi-122481	Trichoderma virens	26.94	4.00e-36	144.00
IUUC-Tae-123504	Triticum aestivum	61.81	2.00e-165	574.00
IUUC-Tur-126586	Triticum urartu	63.07	9.00e-155	538.00
IUUC-Tme-126900	Tuber melanosporum	31.27	9.00e-50	190.00
IUUC-Tbe-127736	Tupaia belangeri	29.17	2.00e-30	125.00
IUUC-Ttr-129041	Tursiops truncatus	30.60	4.00e-43	168.00
IUUC-Uma-129628	Ustilago maydis	31.11	2.00e-09	56.20
IUUC-Vpa-130260	Vicugna pacos	35.34	4.00e-60	224.00
IUUC-Vvi-131009	Vitis vinifera	73.21	0.00e+00	673.00
IUUC-Xtr-132083	Xenopus tropicalis	36.39	5.00e-64	237.00
IUUC-Xma-133094	Xiphophorus maculatus	35.34	5.00e-67	247.00
IUUC-Yli-134531	Yarrowia lipolytica	26.17	9.00e-31	127.00
IUUC-Zma-135509	Zea mays	60.42	1.00e-160	558.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence