iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dse-031443

Ensembl Protein ID

EME49835

UniProt Accession

N1Q4Q7; N1Q4Q7_DOTSN

Genbank Protein ID

EME49835.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

KB446535

Gene Name

ERB1; DOTSEDRAFT_119670

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
DOTSEDRAFT_119670	EME49835	EME49835

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-18	65.4	348	386

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+++v+c a  +  ++++sGsdDgt+++W++ tg++++
   Q: 348  GHEGRVRCTAIdPAgRFIASGSDDGTVRLWSFGTGRQER 386
           8**********855699***************9999875 PP

Organism

Dothistroma septosporum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MGSDTGRELS TISPDTKVKP SAHGEERSNF RIEEDANGNE RYVYGEIEPN YDSDDSDAPA 60
TSNTIGNIPL SYYDAYPHIG YDINGRKLAR PAKGQALDSL LDSIDVPEGW TGLTDPTTGK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGCAGCG ACACTGGTAG AGAACTTAGC ACAATATCGC CTGATACCAA AGTGAAACCA 60
TCGGCACATG GCGAGGAGAG GTCGAACTTC CGCATCGAGG AGGATGCGAA CGGCAACGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	36.28	4.00e-99	353.00
IUUC-Aml-001507	Ailuropoda melanoleuca	38.25	1.00e-125	441.00
IUUC-Atr-003141	Amborella trichopoda	36.11	2.00e-63	234.00
IUUC-Apl-003545	Anas platyrhynchos	39.02	4.00e-114	403.00
IUUC-Aly-005649	Arabidopsis lyrata	38.69	1.00e-123	435.00
IUUC-Ath-007625	Arabidopsis thaliana	39.14	3.00e-119	421.00
IUUC-Ago-007958	Ashbya gossypii	50.51	0.00e+00	696.00
IUUC-Acl-008344	Aspergillus clavatus	60.61	0.00e+00	792.00
IUUC-Afl-008616	Aspergillus flavus	59.34	0.00e+00	805.00
IUUC-Afu-009083	Aspergillus fumigatus	60.69	0.00e+00	782.00
IUUC-Ani-009365	Aspergillus nidulans	59.74	0.00e+00	799.00
IUUC-Ang-009796	Aspergillus niger	59.91	0.00e+00	803.00
IUUC-Aor-010015	Aspergillus oryzae	59.34	0.00e+00	805.00
IUUC-Ate-010537	Aspergillus terreus	59.77	0.00e+00	816.00
IUUC-Ame-011767	Astyanax mexicanus	47.72	2.00e-67	247.00
IUUC-Bgr-012286	Blumeria graminis	60.52	0.00e+00	804.00
IUUC-Bta-013569	Bos taurus	40.52	1.00e-135	475.00
IUUC-Bci-013820	Botrytis cinerea	59.92	0.00e+00	785.00
IUUC-Bdi-014477	Brachypodium distachyon	38.73	3.00e-121	427.00
IUUC-Bol-016099	Brassica oleracea	38.60	1.00e-123	435.00
IUUC-Bra-017174	Brassica rapa	38.69	8.00e-124	436.00
IUUC-Cel-018201	Caenorhabditis elegans	35.95	8.00e-109	385.00
IUUC-Cja-019009	Callithrix jacchus	36.72	2.00e-117	414.00
IUUC-Cfa-020173	Canis familiaris	38.12	2.00e-123	435.00
IUUC-Cpo-021796	Cavia porcellus	40.70	4.00e-134	469.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	39.70	6.00e-118	416.00
IUUC-Csa-023440	Chlorocebus sabaeus	40.40	4.00e-142	496.00
IUUC-Cin-025782	Ciona intestinalis	41.24	6.00e-144	503.00
IUUC-Csv-026352	Ciona savignyi	39.67	2.00e-139	487.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	56.69	0.00e+00	692.00
IUUC-Cne-027004	Cryptococcus neoformans	48.73	0.00e+00	626.00
IUUC-Cme-027242	Cyanidioschyzon merolae	34.15	6.00e-105	373.00
IUUC-Dre-028658	Danio rerio	40.27	2.00e-143	501.00
IUUC-Dno-028883	Dasypus novemcinctus	40.15	6.00e-137	479.00
IUUC-Dor-031031	Dipodomys ordii	40.21	3.00e-138	484.00
IUUC-Dme-031786	Drosophila melanogaster	39.70	2.00e-143	501.00
IUUC-Eca-033677	Equus caballus	41.31	2.00e-136	477.00
IUUC-Eeu-035310	Erinaceus europaeus	37.22	1.00e-100	358.00
IUUC-Fca-035888	Felis catus	39.94	3.00e-138	483.00
IUUC-Fal-037438	Ficedula albicollis	40.04	2.00e-106	377.00
IUUC-Fox-037973	Fusarium oxysporum	61.20	0.00e+00	840.00
IUUC-Fso-038187	Fusarium solani	61.14	0.00e+00	843.00
IUUC-Gmo-039114	Gadus morhua	37.96	8.00e-127	445.00
IUUC-Ggr-039746	Gaeumannomyces graminis	58.93	0.00e+00	811.00
IUUC-Gga-040631	Gallus gallus	40.76	6.00e-80	289.00
IUUC-Gac-042582	Gasterosteus aculeatus	40.06	1.00e-136	478.00
IUUC-Gma-044215	Glycine max	40.12	6.00e-129	452.00
IUUC-Ggo-045587	Gorilla gorilla	40.70	7.00e-142	495.00
IUUC-Hsa-046319	Homo sapiens	40.70	4.00e-142	496.00
IUUC-Hvu-047526	Hordeum vulgare	38.30	4.00e-115	407.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	40.24	3.00e-136	477.00
IUUC-Kpa-049221	Komagataella pastoris	45.11	6.00e-178	615.00
IUUC-Lch-049640	Latimeria chalumnae	40.18	2.00e-150	524.00
IUUC-Lpe-051135	Leersia perrieri	39.88	3.00e-60	224.00
IUUC-Loc-051930	Lepisosteus oculatus	41.01	7.00e-150	522.00
IUUC-Lma-053290	Leptosphaeria maculans	62.10	0.00e+00	820.00
IUUC-Laf-053903	Loxodonta africana	36.28	2.00e-114	404.00
IUUC-Mcc-055471	Macaca mulatta	40.40	7.00e-142	496.00
IUUC-Meu-056190	Macropus eugenii	39.76	1.00e-137	482.00
IUUC-Mor-057135	Magnaporthe oryzae	59.10	0.00e+00	778.00
IUUC-Mpo-057475	Magnaporthe poae	58.20	0.00e+00	764.00
IUUC-Mtr-058689	Medicago truncatula	37.73	1.00e-113	402.00
IUUC-Mla-059149	Melampsora laricipopulina	47.55	5.00e-178	615.00
IUUC-Mga-059645	Meleagris gallopavo	35.09	7.00e-43	165.00
IUUC-Mvi-060485	Microbotryum violaceum	43.18	2.00e-143	502.00
IUUC-Mmr-061674	Microcebus murinus	39.91	2.00e-132	464.00
IUUC-Mdo-062973	Monodelphis domestica	40.52	4.00e-143	500.00
IUUC-Mmu-064180	Mus musculus	40.40	7.00e-139	486.00
IUUC-Mac-064535	Musa acuminata	36.52	1.00e-69	256.00
IUUC-Mpu-066406	Mustela putorius furo	40.70	2.00e-140	491.00
IUUC-Mlu-067795	Myotis lucifugus	40.85	1.00e-129	455.00
IUUC-Nfi-068516	Neosartorya fischeri	58.62	0.00e+00	755.00
IUUC-Ncr-068767	Neurospora crassa	59.68	0.00e+00	751.00
IUUC-Opr-071084	Ochotona princeps	38.46	9.00e-53	199.00
IUUC-Ont-071614	Oreochromis niloticus	40.55	5.00e-147	513.00
IUUC-Oba-075980	Oryza barthii	39.60	1.00e-60	226.00
IUUC-Obr-076799	Oryza brachyantha	38.23	4.00e-120	423.00
IUUC-Ogl-077134	Oryza glaberrima	39.08	4.00e-115	407.00
IUUC-Ogu-078655	Oryza glumaepatula	36.64	2.00e-107	381.00
IUUC-Oin-079654	Oryza indica	39.08	4.00e-115	407.00
IUUC-Olo-080706	Oryza longistaminata	40.17	1.00e-60	226.00
IUUC-Ome-081716	Oryza meridionalis	39.88	1.00e-60	226.00
IUUC-Oni-082508	Oryza nivara	35.73	2.00e-102	364.00
IUUC-Opu-083707	Oryza punctata	40.17	2.00e-60	225.00
IUUC-Oru-084453	Oryza rufipogon	40.17	1.00e-60	226.00
IUUC-Osa-085811	Oryza sativa	39.08	4.00e-115	407.00
IUUC-Ola-087361	Oryzias latipes	41.18	4.00e-147	513.00
IUUC-Oga-088015	Otolemur garnettii	40.00	3.00e-140	490.00
IUUC-Oar-090058	Ovis aries	47.31	1.00e-47	182.00
IUUC-Ptr-090631	Pan troglodytes	38.68	5.00e-56	209.00
IUUC-Pan-092306	Papio anubis	40.33	4.00e-140	490.00
IUUC-Pma-094622	Petromyzon marinus	40.06	6.00e-148	515.00
IUUC-Pno-094794	Phaeosphaeria nodorum	58.31	0.00e+00	780.00
IUUC-Ppa-095528	Physcomitrella patens	36.33	3.00e-72	264.00
IUUC-Pfo-096682	Poecilia formosa	40.42	3.00e-148	517.00
IUUC-Pab-097939	Pongo abelii	40.63	1.00e-126	444.00
IUUC-Pop-099043	Populus trichocarpa	41.17	5.00e-116	409.00
IUUC-Pca-100333	Procavia capensis	40.06	2.00e-134	471.00
IUUC-Ppe-102078	Prunus persica	40.83	7.00e-126	442.00
IUUC-Pgr-103525	Puccinia graminis	46.57	2.00e-166	578.00
IUUC-Ptt-103929	Puccinia triticina	46.59	1.00e-162	565.00
IUUC-Pte-104029	Pyrenophora teres	61.95	0.00e+00	862.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	61.29	0.00e+00	860.00
IUUC-Rno-105248	Rattus norvegicus	40.40	3.00e-139	487.00
IUUC-Sce-106381	Saccharomyces cerevisiae	50.29	0.00e+00	686.00
IUUC-Sha-106519	Sarcophilus harrisii	40.30	4.00e-143	499.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	44.36	7.00e-151	525.00
IUUC-Spo-108071	Schizosaccharomyces pombe	44.62	1.00e-151	528.00
IUUC-Smo-109604	Selaginella moellendorffii	38.06	7.00e-112	396.00
IUUC-Sit-110551	Setaria italica	38.96	2.00e-117	414.00
IUUC-Sly-110970	Solanum lycopersicum	40.44	2.00e-65	241.00
IUUC-Stu-112593	Solanum tuberosum	40.89	7.00e-131	459.00
IUUC-Sar-113123	Sorex araneus	46.25	7.00e-59	219.00
IUUC-Sbi-113945	Sorghum bicolor	38.20	2.00e-119	421.00
IUUC-Sre-115188	Sporisorium reilianum	44.58	1.00e-166	578.00
IUUC-Ssc-115352	Sus scrofa	40.37	9.00e-140	488.00
IUUC-Tru-117685	Takifugu rubripes	41.52	2.00e-152	530.00
IUUC-Tni-119982	Tetraodon nigroviridis	40.80	4.00e-145	506.00
IUUC-Tca-121664	Theobroma cacao	40.18	1.00e-126	445.00
IUUC-Tre-122229	Trichoderma reesei	59.57	0.00e+00	711.00
IUUC-Tvi-122576	Trichoderma virens	60.47	0.00e+00	738.00
IUUC-Tae-124110	Triticum aestivum	38.93	2.00e-109	388.00
IUUC-Tur-126781	Triticum urartu	36.01	8.00e-95	339.00
IUUC-Tme-127080	Tuber melanosporum	59.85	0.00e+00	794.00
IUUC-Ttr-128514	Tursiops truncatus	38.24	6.00e-82	296.00
IUUC-Uma-129556	Ustilago maydis	45.06	2.00e-161	561.00
IUUC-Vda-129715	Verticillium dahliae	58.97	0.00e+00	801.00
IUUC-Vvi-131211	Vitis vinifera	39.50	2.00e-119	421.00
IUUC-Xma-133883	Xiphophorus maculatus	39.37	4.00e-143	500.00
IUUC-Yli-134438	Yarrowia lipolytica	49.08	0.00e+00	633.00
IUUC-Zma-135341	Zea mays	35.03	1.00e-110	392.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence