iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111074

Ensembl Protein ID

Solyc01g056940.2.1

UniProt Accession

P62980; O82079; P03993; P27083; P69318; RS27A_SOLLC

Genbank Protein ID

CAA41207.1

Protein Name

Ubiquitin-40S ribosomal protein S27a; Ubiquitin; 40S ribosomal protein S27a

Genbank Nucleotide ID

X58253

Gene Name

UBI3; RPS27A

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc01g056940.2	Solyc01g056940.2.1	Solyc01g056940.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	1.90e-41	140.9	1	76
ULD/UDP/UBQ/UBQ_PIM	9.20e-28	96.8	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Solanum lycopersicum

Functional Description
(View)

Ribosomal protein S27a is part of the 40S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL TVLQFYKVDD TGKVQRLRKE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCTCCCTCT CTTTATGTTC TTTTCTTTTT CTTATTCAAA CCCTCTTTCT TTTACCCTAA 60
TTAGCATATA ATTTATCAAC AAAAGAAACC CTAGAAGCCG CAGTGCCACT GATTTCTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR002906--Ribosomal_S27a
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01599--Ribosomal_S27
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01402--Ribosomal_S27
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0005840--C:ribosome
GO:0046872--F:metal ion binding
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001873	Ailuropoda melanoleuca	84.97	8.00e-58	214.00
IUUC-Apl-003364	Anas platyrhynchos	75.16	3.00e-50	189.00
IUUC-Aca-005055	Anolis carolinensis	84.31	5.00e-63	232.00
IUUC-Ame-011421	Astyanax mexicanus	84.97	2.00e-57	213.00
IUUC-Bta-012585	Bos taurus	84.97	8.00e-58	214.00
IUUC-Bdi-014571	Brachypodium distachyon	96.08	2.00e-63	233.00
IUUC-Cja-019661	Callithrix jacchus	84.31	3.00e-53	199.00
IUUC-Cfa-020795	Canis familiaris	84.97	8.00e-58	214.00
IUUC-Cpo-021905	Cavia porcellus	83.87	2.00e-56	210.00
IUUC-Csa-023120	Chlorocebus sabaeus	84.97	8.00e-58	214.00
IUUC-Dre-028206	Danio rerio	84.97	2.00e-57	213.00
IUUC-Dno-029073	Dasypus novemcinctus	84.97	6.00e-58	215.00
IUUC-Ete-032297	Echinops telfairi	59.48	1.00e-47	181.00
IUUC-Eca-034346	Equus caballus	85.53	5.00e-58	216.00
IUUC-Fca-035555	Felis catus	84.97	8.00e-58	214.00
IUUC-Fal-037049	Ficedula albicollis	84.97	5.00e-58	215.00
IUUC-Gmo-039231	Gadus morhua	84.97	2.00e-57	213.00
IUUC-Gga-040938	Gallus gallus	84.97	5.00e-58	215.00
IUUC-Gac-041956	Gasterosteus aculeatus	84.97	2.00e-57	213.00
IUUC-Ggo-044980	Gorilla gorilla	84.97	8.00e-58	214.00
IUUC-Hsa-046329	Homo sapiens	84.97	8.00e-58	214.00
IUUC-Itr-047994	Ictidomys tridecemlineatus	84.97	8.00e-58	214.00
IUUC-Lch-050032	Latimeria chalumnae	84.97	4.00e-58	216.00
IUUC-Loc-052020	Lepisosteus oculatus	84.97	2.00e-57	213.00
IUUC-Laf-054502	Loxodonta africana	80.85	3.00e-47	179.00
IUUC-Mcc-055895	Macaca mulatta	84.97	8.00e-58	214.00
IUUC-Meu-056529	Macropus eugenii	84.97	8.00e-58	214.00
IUUC-Mga-059211	Meleagris gallopavo	79.72	2.00e-49	187.00
IUUC-Mmr-060694	Microcebus murinus	84.97	8.00e-58	214.00
IUUC-Mmu-064336	Mus musculus	84.31	3.00e-57	213.00
IUUC-Mpu-066613	Mustela putorius furo	84.97	8.00e-58	214.00
IUUC-Mlu-067676	Myotis lucifugus	84.97	8.00e-58	214.00
IUUC-Nle-069607	Nomascus leucogenys	81.70	6.00e-55	205.00
IUUC-Opr-070523	Ochotona princeps	83.55	9.00e-55	204.00
IUUC-Ont-071636	Oreochromis niloticus	84.97	2.00e-57	213.00
IUUC-Ocu-074497	Oryctolagus cuniculus	84.97	8.00e-58	214.00
IUUC-Oba-075488	Oryza barthii	96.08	2.00e-63	233.00
IUUC-Obr-076443	Oryza brachyantha	96.08	2.00e-63	233.00
IUUC-Ogl-077000	Oryza glaberrima	96.08	2.00e-63	233.00
IUUC-Oin-080161	Oryza indica	96.08	2.00e-63	233.00
IUUC-Olo-080936	Oryza longistaminata	92.59	3.00e-26	108.00
IUUC-Ome-081322	Oryza meridionalis	96.08	2.00e-63	233.00
IUUC-Oru-085032	Oryza rufipogon	96.08	2.00e-63	233.00
IUUC-Osa-085398	Oryza sativa	96.08	2.00e-63	233.00
IUUC-Ola-086383	Oryzias latipes	84.97	1.00e-57	214.00
IUUC-Oga-089160	Otolemur garnettii	73.86	5.00e-55	205.00
IUUC-Oar-090107	Ovis aries	85.53	9.00e-58	214.00
IUUC-Ptr-090693	Pan troglodytes	84.97	8.00e-58	214.00
IUUC-Pan-092065	Papio anubis	84.97	8.00e-58	214.00
IUUC-Psi-093901	Pelodiscus sinensis	83.21	6.00e-49	185.00
IUUC-Pma-094647	Petromyzon marinus	81.51	2.00e-37	146.00
IUUC-Pfo-097442	Poecilia formosa	84.97	2.00e-57	213.00
IUUC-Pab-098246	Pongo abelii	75.16	6.00e-55	205.00
IUUC-Rno-105805	Rattus norvegicus	84.31	3.00e-57	213.00
IUUC-Sha-106772	Sarcophilus harrisii	84.97	8.00e-58	214.00
IUUC-Sit-110054	Setaria italica	96.73	4.00e-69	252.00
IUUC-Stu-112439	Solanum tuberosum	99.36	8.00e-74	268.00
IUUC-Sbi-113920	Sorghum bicolor	96.08	1.00e-68	250.00
IUUC-Ssc-115514	Sus scrofa	84.97	8.00e-58	214.00
IUUC-Tgu-116890	Taeniopygia guttata	84.42	1.00e-56	211.00
IUUC-Tru-118475	Takifugu rubripes	84.97	2.00e-57	213.00
IUUC-Tsy-119447	Tarsius syrichta	84.97	7.00e-58	214.00
IUUC-Tni-119751	Tetraodon nigroviridis	81.75	2.00e-47	179.00
IUUC-Tae-124683	Triticum aestivum	96.08	2.00e-63	233.00
IUUC-Tbe-127851	Tupaia belangeri	96.10	3.00e-39	152.00
IUUC-Ttr-128453	Tursiops truncatus	84.97	8.00e-58	214.00
IUUC-Vpa-130119	Vicugna pacos	67.11	1.00e-36	144.00
IUUC-Xtr-131977	Xenopus tropicalis	76.47	1.00e-49	187.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence