iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016869

Ensembl Protein ID

Bra039543.1-P

UniProt Accession

M4FEM1; M4FEM1_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra039543	Bra039543.1	Bra039543.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.90e-46	153.7	146	184
UBD/Beta-Prp	1.30e-91	307.9	28	223

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH d vt+l f +d + lv++s D+ ++vWDl t+++ +
   Q: 146  GHRDQVTDLVFlDDgKKLVTASKDKFLRVWDLETQHCMQ 184
           8***********888********************9986 PP

UBD/Beta-Prp

   S: 105  sgdklvsGshdrtirvwdletgqclee.....tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkel 195
           s+ k v + + + + +w++++g c ++        g++ +v++++++  +  ++ G +D+ +r+Wd++ g++ +tl g h+++v+ l +++ g  +
   Q: 28   STGKHVLAPALEKVGIWHVRQGICTKTlvpssSRVGKSLAVTSIASSA-STSVAVGYADGSIRIWDSEKGTCETTLNG-HKGAVTALRYNKAGSMF 121
           4567778888999*************8887544444444555555554.599*************************9.***************** PP
   S: 196  vsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvni 291
           +sgs+d++v+lwd+  ++ + +l+gh+d+v+++ f+++++ lv++s+D+ +r+Wdl+++ +++ +++h++ v+sv+v ++++++lv+gs+d+++++
   Q: 122  ASGSKDNDVILWDVVGETGLFRLRGHRDQVTDLVFLDDGKKLVTASKDKFLRVWDLETQHCMQIISGHHTEVWSVDV-DPEEKYLVTGSADQELRF 216
           ***************9999**********************************************************.****************** PP
   S: 292  wklkkne 298
           +++k+n 
   Q: 217  YAVKQNM 223
           **99875 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MVKAYLRYEQ ASSFGVITSL ESNISYDSTG KHVLAPALEK VGIWHVRQGI CTKTLVPSSS 60
RVGKSLAVTS IASSASTSVA VGYADGSIRI WDSEKGTCET TLNGHKGAVT ALRYNKAGSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTGAAGG CGTACCTAAG ATACGAGCAA GCTTCTTCCT TTGGCGTCAT AACGTCTCTG 60
GAGTCTAACA TCTCTTACGA TTCCACGGGG AAGCATGTGC TTGCTCCGGC CCTCGAGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	57.44	0.00e+00	928.00
IUUC-Aml-001245	Ailuropoda melanoleuca	38.49	3.00e-175	608.00
IUUC-Atr-002700	Amborella trichopoda	60.68	0.00e+00	1075.00
IUUC-Apl-004164	Anas platyrhynchos	42.25	7.00e-146	510.00
IUUC-Aca-004765	Anolis carolinensis	39.47	8.00e-178	617.00
IUUC-Aly-006503	Arabidopsis lyrata	82.08	0.00e+00	1455.00
IUUC-Ath-006848	Arabidopsis thaliana	81.32	0.00e+00	1452.00
IUUC-Ago-007909	Ashbya gossypii	33.92	7.00e-150	524.00
IUUC-Acl-008238	Aspergillus clavatus	35.71	7.00e-163	567.00
IUUC-Afl-008544	Aspergillus flavus	36.13	7.00e-163	567.00
IUUC-Afu-008868	Aspergillus fumigatus	37.06	1.00e-163	570.00
IUUC-Ani-009367	Aspergillus nidulans	36.78	2.00e-163	569.00
IUUC-Ang-009732	Aspergillus niger	36.59	3.00e-166	578.00
IUUC-Aor-010140	Aspergillus oryzae	36.47	3.00e-165	575.00
IUUC-Ate-010572	Aspergillus terreus	35.98	3.00e-162	566.00
IUUC-Ame-010956	Astyanax mexicanus	43.96	7.00e-123	434.00
IUUC-Bgr-012296	Blumeria graminis	35.71	2.00e-159	556.00
IUUC-Bta-012716	Bos taurus	38.97	3.00e-180	625.00
IUUC-Bci-013699	Botrytis cinerea	36.30	1.00e-157	550.00
IUUC-Bdi-014525	Brachypodium distachyon	60.34	0.00e+00	1016.00
IUUC-Bol-015117	Brassica oleracea	97.68	0.00e+00	1678.00
IUUC-Cel-018570	Caenorhabditis elegans	28.54	7.00e-96	345.00
IUUC-Cja-019425	Callithrix jacchus	38.81	6.00e-180	624.00
IUUC-Cfa-020787	Canis familiaris	38.82	5.00e-176	611.00
IUUC-Cpo-021729	Cavia porcellus	39.88	1.00e-134	473.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	50.28	2.00e-122	433.00
IUUC-Csa-024098	Chlorocebus sabaeus	38.82	7.00e-180	624.00
IUUC-Cho-024495	Choloepus hoffmanni	36.64	1.00e-92	334.00
IUUC-Cin-025245	Ciona intestinalis	36.15	3.00e-103	368.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	36.06	7.00e-155	541.00
IUUC-Cne-026835	Cryptococcus neoformans	40.62	2.00e-115	410.00
IUUC-Cme-027162	Cyanidioschyzon merolae	25.32	5.00e-54	206.00
IUUC-Dre-027874	Danio rerio	40.11	2.00e-176	612.00
IUUC-Dno-028905	Dasypus novemcinctus	39.14	0.00e+00	627.00
IUUC-Dor-030383	Dipodomys ordii	36.61	2.00e-74	273.00
IUUC-Dse-031297	Dothistroma septosporum	34.36	2.00e-147	516.00
IUUC-Dme-031956	Drosophila melanogaster	35.08	2.00e-138	486.00
IUUC-Ete-032608	Echinops telfairi	37.50	5.00e-103	368.00
IUUC-Eca-034181	Equus caballus	38.87	4.00e-177	615.00
IUUC-Eeu-034495	Erinaceus europaeus	39.63	1.00e-175	609.00
IUUC-Fca-035994	Felis catus	40.72	2.00e-170	592.00
IUUC-Fal-036611	Ficedula albicollis	38.40	4.00e-170	591.00
IUUC-Fox-037807	Fusarium oxysporum	38.35	4.00e-161	561.00
IUUC-Fso-038090	Fusarium solani	36.33	6.00e-157	548.00
IUUC-Gmo-039018	Gadus morhua	37.31	5.00e-88	318.00
IUUC-Ggr-039748	Gaeumannomyces graminis	36.75	2.00e-161	563.00
IUUC-Gga-040707	Gallus gallus	39.70	2.00e-175	608.00
IUUC-Gac-042334	Gasterosteus aculeatus	35.41	3.00e-81	296.00
IUUC-Gma-043033	Glycine max	69.43	0.00e+00	1206.00
IUUC-Ggo-045334	Gorilla gorilla	38.70	6.00e-178	617.00
IUUC-Hsa-046996	Homo sapiens	38.78	1.00e-177	616.00
IUUC-Hvu-047381	Hordeum vulgare	54.92	3.00e-164	571.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	38.81	1.00e-177	617.00
IUUC-Kpa-049185	Komagataella pastoris	35.16	7.00e-150	524.00
IUUC-Lch-050098	Latimeria chalumnae	38.09	1.00e-156	546.00
IUUC-Lpe-050710	Leersia perrieri	58.18	0.00e+00	989.00
IUUC-Loc-052745	Lepisosteus oculatus	38.18	2.00e-163	569.00
IUUC-Lma-053104	Leptosphaeria maculans	35.74	4.00e-158	552.00
IUUC-Laf-054395	Loxodonta africana	39.75	3.00e-179	622.00
IUUC-Mcc-055077	Macaca mulatta	39.04	4.00e-179	621.00
IUUC-Meu-056418	Macropus eugenii	42.20	2.00e-95	343.00
IUUC-Mor-057031	Magnaporthe oryzae	36.48	7.00e-147	514.00
IUUC-Mpo-057420	Magnaporthe poae	37.10	2.00e-159	556.00
IUUC-Mtr-057838	Medicago truncatula	67.02	0.00e+00	1203.00
IUUC-Mla-058854	Melampsora laricipopulina	34.67	2.00e-141	496.00
IUUC-Mga-060120	Meleagris gallopavo	41.56	8.00e-130	457.00
IUUC-Mvi-060407	Microbotryum violaceum	39.17	0.00e+00	639.00
IUUC-Mmr-060635	Microcebus murinus	39.21	1.00e-176	613.00
IUUC-Mdo-063023	Monodelphis domestica	39.55	0.00e+00	629.00
IUUC-Mmu-064103	Mus musculus	39.81	0.00e+00	633.00
IUUC-Mac-065569	Musa acuminata	63.63	0.00e+00	1153.00
IUUC-Mpu-066462	Mustela putorius furo	38.36	2.00e-177	616.00
IUUC-Mlu-067894	Myotis lucifugus	38.57	4.00e-178	618.00
IUUC-Nfi-068321	Neosartorya fischeri	35.95	4.00e-163	568.00
IUUC-Ncr-068661	Neurospora crassa	36.97	2.00e-157	549.00
IUUC-Nle-069409	Nomascus leucogenys	39.22	2.00e-178	619.00
IUUC-Opr-070445	Ochotona princeps	36.95	1.00e-168	587.00
IUUC-Ont-072339	Oreochromis niloticus	40.48	8.00e-171	593.00
IUUC-Oan-073688	Ornithorhynchus anatinus	39.76	1.00e-172	599.00
IUUC-Ocu-074227	Oryctolagus cuniculus	39.08	4.00e-180	624.00
IUUC-Oba-075635	Oryza barthii	58.31	0.00e+00	967.00
IUUC-Obr-076897	Oryza brachyantha	58.84	0.00e+00	1011.00
IUUC-Ogl-077555	Oryza glaberrima	58.20	0.00e+00	966.00
IUUC-Ogu-078724	Oryza glumaepatula	58.09	0.00e+00	967.00
IUUC-Oin-080030	Oryza indica	58.20	0.00e+00	968.00
IUUC-Olo-080687	Oryza longistaminata	54.94	0.00e+00	919.00
IUUC-Ome-081867	Oryza meridionalis	58.31	0.00e+00	968.00
IUUC-Oni-082559	Oryza nivara	58.20	0.00e+00	966.00
IUUC-Opu-083332	Oryza punctata	55.94	0.00e+00	879.00
IUUC-Oru-084455	Oryza rufipogon	58.31	0.00e+00	970.00
IUUC-Osa-085793	Oryza sativa	58.31	0.00e+00	970.00
IUUC-Ola-087395	Oryzias latipes	44.01	4.00e-115	409.00
IUUC-Olu-087768	Ostreococcus lucimarinus	42.70	0.00e+00	650.00
IUUC-Oga-088574	Otolemur garnettii	39.25	7.00e-180	624.00
IUUC-Oar-089453	Ovis aries	38.57	7.00e-180	624.00
IUUC-Ptr-090694	Pan troglodytes	38.89	3.00e-178	618.00
IUUC-Pan-092420	Papio anubis	38.63	2.00e-178	619.00
IUUC-Psi-093683	Pelodiscus sinensis	39.85	3.00e-175	608.00
IUUC-Pma-094197	Petromyzon marinus	37.17	6.00e-36	143.00
IUUC-Pno-094783	Phaeosphaeria nodorum	36.47	3.00e-156	545.00
IUUC-Ppa-095208	Physcomitrella patens	51.39	0.00e+00	865.00
IUUC-Pfo-096299	Poecilia formosa	39.59	1.00e-175	610.00
IUUC-Pab-098706	Pongo abelii	38.91	6.00e-178	617.00
IUUC-Pop-099275	Populus trichocarpa	69.88	0.00e+00	1206.00
IUUC-Pca-100796	Procavia capensis	33.49	7.00e-116	411.00
IUUC-Ppe-101861	Prunus persica	70.35	0.00e+00	1258.00
IUUC-Pva-103241	Pteropus vampyrus	38.24	1.00e-167	583.00
IUUC-Pgr-103432	Puccinia graminis	35.68	9.00e-145	507.00
IUUC-Ptt-103742	Puccinia triticina	37.52	5.00e-126	445.00
IUUC-Pte-104069	Pyrenophora teres	36.10	1.00e-153	536.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	35.77	6.00e-163	567.00
IUUC-Rno-105219	Rattus norvegicus	38.40	6.00e-175	607.00
IUUC-Sce-106271	Saccharomyces cerevisiae	35.32	6.00e-146	511.00
IUUC-Sha-107550	Sarcophilus harrisii	39.19	1.00e-178	620.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	36.40	8.00e-159	554.00
IUUC-Spo-108239	Schizosaccharomyces pombe	35.10	5.00e-158	551.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	35.54	3.00e-162	565.00
IUUC-Smo-109477	Selaginella moellendorffii	54.29	0.00e+00	904.00
IUUC-Sit-110000	Setaria italica	60.09	0.00e+00	979.00
IUUC-Sly-111595	Solanum lycopersicum	69.01	0.00e+00	1167.00
IUUC-Stu-112516	Solanum tuberosum	69.37	0.00e+00	1166.00
IUUC-Sar-113195	Sorex araneus	39.52	5.00e-120	425.00
IUUC-Sbi-114465	Sorghum bicolor	58.34	0.00e+00	1005.00
IUUC-Sre-115006	Sporisorium reilianum	37.42	6.00e-109	388.00
IUUC-Ssc-115929	Sus scrofa	38.78	3.00e-176	612.00
IUUC-Tgu-117282	Taeniopygia guttata	37.98	2.00e-169	589.00
IUUC-Tru-118406	Takifugu rubripes	39.23	7.00e-172	597.00
IUUC-Tsy-119170	Tarsius syrichta	38.53	2.00e-176	612.00
IUUC-Tni-119721	Tetraodon nigroviridis	39.72	4.00e-163	568.00
IUUC-Tca-121761	Theobroma cacao	71.40	0.00e+00	1284.00
IUUC-Tre-121908	Trichoderma reesei	35.52	2.00e-157	550.00
IUUC-Tvi-122547	Trichoderma virens	36.91	3.00e-161	562.00
IUUC-Tae-125433	Triticum aestivum	60.04	0.00e+00	991.00
IUUC-Tur-126811	Triticum urartu	61.93	0.00e+00	980.00
IUUC-Tme-126987	Tuber melanosporum	37.98	3.00e-172	598.00
IUUC-Tbe-127315	Tupaia belangeri	43.51	9.00e-104	371.00
IUUC-Ttr-129165	Tursiops truncatus	34.19	8.00e-136	477.00
IUUC-Uma-129651	Ustilago maydis	34.27	1.00e-149	523.00
IUUC-Vda-129973	Verticillium dahliae	36.51	7.00e-151	528.00
IUUC-Vpa-130163	Vicugna pacos	33.57	2.00e-65	243.00
IUUC-Vvi-131402	Vitis vinifera	70.54	0.00e+00	1241.00
IUUC-Xtr-132296	Xenopus tropicalis	39.17	3.00e-174	605.00
IUUC-Xma-133028	Xiphophorus maculatus	39.61	8.00e-175	607.00
IUUC-Yli-134484	Yarrowia lipolytica	38.19	6.00e-154	537.00
IUUC-Zma-135938	Zea mays	57.13	0.00e+00	1012.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence