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Tag Content
UUCD2 ID IUUC-Cpo-021643
UUCD1 version UUC-CaP-00313
Ensembl Protein ID ENSCPOP00000006217.2
UniProt Accession H0V8U9; H0V8U9_CAVPO
Genbank Protein ID ENSCPOP00000006217
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AAKN02012464
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSCPOG00000006893.3 ENSCPOT00000006962.2 ENSCPOP00000006217.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/RING 7.40e-07 29.6 16 55
UBD/Alpha-Helix/MIU 7.60e-12 44.4 168 190
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C+iC+e + + p++lpC H+ + C+ + +++ + +CP Cr
   Q: 16 CPICMEILVE-PVTLPCRHTLCNPCFRAT-----VEKASLYCPFCR 55
    **********.9**************444.....5**********8 PP
   


   UBD/Alpha-Helix/MIU

   S: 1    rekQlkeDeeLAerLqreveeaf 23
    +e+Qlk+De LA+rL++ ++++
   Q: 168 MEEQLKSDEALARRLSININNFH 190
    9********************96 PP
   

Organism Cavia porcellus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVSRDAVPA LSECQCPICM EILVEPVTLP CRHTLCNPCF RATVEKASLY CPFCRRRVSS 60
WTRYHTRRNS LINVELWDLI QKHYPAECKR RASGQESEEI GEACQPIRLL SQPGELRREY 120
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Protein Fasta Sequence



>IUUC-Cpo-021643|E3,RING;UBD,MIU|Cavia porcellus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGCTGTGT CGCGAGACGC TGTCCCCGCG CTGTCCGAGT GCCAGTGCCC GATCTGCATG 60
GAGATCCTGG TGGAACCCGT GACCCTGCCC TGCCGCCACA CCCTCTGCAA CCCGTGCTTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Cpo-021643|E3,RING;UBD,MIU|Cavia porcellus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000755 Aegilops tauschii 35.44 9.00e-11 61.20
IUUC-Aml-001573 Ailuropoda melanoleuca 62.98 1.00e-150 526.00
IUUC-Atr-002992 Amborella trichopoda 36.99 8.00e-10 57.80
IUUC-Apl-003963 Anas platyrhynchos 39.45 6.00e-58 218.00
IUUC-Aca-004420 Anolis carolinensis 65.85 4.00e-46 179.00
IUUC-Ame-011521 Astyanax mexicanus 55.17 7.00e-38 151.00
IUUC-Bta-013002 Bos taurus 59.41 1.00e-145 509.00
IUUC-Cja-019945 Callithrix jacchus 62.85 3.00e-150 525.00
IUUC-Cfa-020533 Canis familiaris 61.42 1.00e-144 506.00
IUUC-Csa-023638 Chlorocebus sabaeus 61.70 1.00e-157 550.00
IUUC-Cho-024319 Choloepus hoffmanni 61.31 4.00e-140 491.00
IUUC-Cin-025679 Ciona intestinalis 37.04 4.00e-21 95.10
IUUC-Csv-026052 Ciona savignyi 36.94 4.00e-20 91.30
IUUC-Dre-028519 Danio rerio 43.89 2.00e-35 143.00
IUUC-Dno-029294 Dasypus novemcinctus 62.35 3.00e-154 538.00
IUUC-Ete-032714 Echinops telfairi 72.65 5.00e-50 192.00
IUUC-Eca-033343 Equus caballus 63.04 4.00e-157 548.00
IUUC-Eeu-034633 Erinaceus europaeus 57.50 6.00e-05 41.60
IUUC-Fca-036251 Felis catus 61.78 6.00e-153 534.00
IUUC-Fal-037048 Ficedula albicollis 41.22 4.00e-64 239.00
IUUC-Gmo-039400 Gadus morhua 46.96 1.00e-30 124.00
IUUC-Gga-040444 Gallus gallus 37.13 1.00e-59 224.00
IUUC-Gac-041735 Gasterosteus aculeatus 51.69 3.00e-35 141.00
IUUC-Gma-044332 Glycine max 37.97 1.00e-12 67.40
IUUC-Ggo-044940 Gorilla gorilla 54.93 2.00e-92 332.00
IUUC-Hsa-046424 Homo sapiens 63.26 5.00e-150 524.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 62.41 3.00e-142 498.00
IUUC-Lch-050649 Latimeria chalumnae 37.52 4.00e-48 185.00
IUUC-Loc-051847 Lepisosteus oculatus 45.74 3.00e-38 152.00
IUUC-Laf-053938 Loxodonta africana 56.19 4.00e-154 537.00
IUUC-Mcc-055360 Macaca mulatta 61.70 1.00e-151 530.00
IUUC-Meu-056684 Macropus eugenii 43.40 2.00e-85 309.00
IUUC-Mtr-058007 Medicago truncatula 37.97 2.00e-12 66.60
IUUC-Mga-059699 Meleagris gallopavo 37.77 1.00e-59 224.00
IUUC-Mmr-060779 Microcebus murinus 63.67 5.00e-166 577.00
IUUC-Mdo-062225 Monodelphis domestica 48.64 7.00e-102 364.00
IUUC-Mmu-064239 Mus musculus 53.57 5.00e-109 388.00
IUUC-Mpu-066141 Mustela putorius furo 62.41 1.00e-159 556.00
IUUC-Mlu-067945 Myotis lucifugus 62.63 2.00e-158 552.00
IUUC-Nle-069769 Nomascus leucogenys 63.78 2.00e-155 542.00
IUUC-Opr-070905 Ochotona princeps 53.37 6.00e-128 451.00
IUUC-Ont-071477 Oreochromis niloticus 52.21 3.00e-33 135.00
IUUC-Oan-073587 Ornithorhynchus anatinus 66.93 6.00e-47 179.00
IUUC-Ocu-073832 Oryctolagus cuniculus 58.51 1.00e-137 483.00
IUUC-Ola-086478 Oryzias latipes 48.39 4.00e-33 133.00
IUUC-Oga-088318 Otolemur garnettii 61.49 2.00e-154 539.00
IUUC-Oar-089647 Ovis aries 60.10 2.00e-146 512.00
IUUC-Ptr-090516 Pan troglodytes 63.95 3.00e-159 555.00
IUUC-Pan-092302 Papio anubis 61.42 2.00e-150 525.00
IUUC-Psi-093604 Pelodiscus sinensis 40.29 6.00e-69 255.00
IUUC-Pfo-096441 Poecilia formosa 48.31 3.00e-32 132.00
IUUC-Pab-097729 Pongo abelii 62.91 2.00e-153 535.00
IUUC-Pop-099737 Populus trichocarpa 32.67 9.00e-11 62.40
IUUC-Pca-100552 Procavia capensis 47.94 5.00e-74 271.00
IUUC-Ppe-102024 Prunus persica 36.84 4.00e-12 67.40
IUUC-Pva-102780 Pteropus vampyrus 62.76 6.00e-157 547.00
IUUC-Rno-105461 Rattus norvegicus 53.30 8.00e-112 397.00
IUUC-Sha-106809 Sarcophilus harrisii 48.12 2.00e-107 383.00
IUUC-Sja-107830 Schizosaccharomyces japonicus 32.29 3.00e-09 56.60
IUUC-Sly-111317 Solanum lycopersicum 38.55 5.00e-13 68.90
IUUC-Stu-112446 Solanum tuberosum 34.00 9.00e-13 67.80
IUUC-Sar-113579 Sorex araneus 52.86 1.00e-119 423.00
IUUC-Sbi-113834 Sorghum bicolor 38.82 2.00e-12 67.00
IUUC-Tgu-117187 Taeniopygia guttata 61.97 8.00e-47 179.00
IUUC-Tru-118182 Takifugu rubripes 49.17 6.00e-34 138.00
IUUC-Tsy-119217 Tarsius syrichta 48.65 2.00e-44 172.00
IUUC-Tni-120205 Tetraodon nigroviridis 50.00 1.00e-34 140.00
IUUC-Tca-121416 Theobroma cacao 38.55 1.00e-12 67.00
IUUC-Tre-121992 Trichoderma reesei 32.04 1.00e-09 57.40
IUUC-Tvi-122557 Trichoderma virens 28.57 3.00e-05 43.10
IUUC-Tae-123092 Triticum aestivum 35.44 1.00e-10 61.20
IUUC-Tur-126688 Triticum urartu 34.18 7.00e-11 61.20
IUUC-Tbe-127622 Tupaia belangeri 61.70 6.00e-157 547.00
IUUC-Ttr-128988 Tursiops truncatus 62.63 5.00e-156 544.00
IUUC-Vpa-130302 Vicugna pacos 53.43 6.00e-83 301.00
IUUC-Vvi-131424 Vitis vinifera 37.35 6.00e-11 61.60
IUUC-Xtr-132196 Xenopus tropicalis 37.80 9.00e-54 204.00
Created Date 25-Jun-2017

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