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Tag Content
iUUCD ID IUUC-Oar-089647
Ensembl Protein ID ENSOARP00000021838.1
UniProt Accession W5QGI9; W5QGI9_SHEEP
Genbank Protein ID ENSOARP00000021838
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AMGL01008827
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSOARG00000020335.1 ENSOART00000022143.1 ENSOARP00000021838.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 2.70e-10 40.0 168 191
E3 activity/RING/RING 9.40e-06 26.2 16 55
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    +++Q+++D+ELA++L+ +++++++
   Q: 168 MEEQLKSDEELARRLSLDINNFCE 191
    89********************97 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadCl.qkwpglknssskefrCPlCr 46
    C iC e +++ p++lpC+H+ ++ C+ + ++ + CP Cr
   Q: 16 CQICVEILFE-PVTLPCNHTLCKPCFeSTV------EKASLCCPFCR 55
    9*********.9**************6666......**********8 PP
   

Organism Ovis aries
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVRKDSIPS LLECQCQICV EILFEPVTLP CNHTLCKPCF ESTVEKASLC CPFCRRRVSS 60
WARYRTRTNS LVNMELWETI QKHYPKECKL RASGQESKEI VDDYQPVRLL SKPGELRREY 120
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Protein Fasta Sequence



>IUUC-Oar-089647|E3,RING;UBD,MIU|Ovis aries
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTATTGATGT TGAATATGCC TTATTAGCAT ATTAAAATGG CTGTACGCAA AGACTCCATC 60
CCTTCCTTGT TAGAATGTCA ATGCCAAATC TGTGTGGAAA TCCTCTTTGA GCCTGTGACA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Oar-089647|E3,RING;UBD,MIU|Ovis aries
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG oas:101121991
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 75.92 0.00e+00 713.00
IUUC-Atr-002992 Amborella trichopoda 41.10 1.00e-10 60.50
IUUC-Apl-003963 Anas platyrhynchos 44.90 8.00e-70 258.00
IUUC-Aca-004420 Anolis carolinensis 65.87 4.00e-45 176.00
IUUC-Ath-007019 Arabidopsis thaliana 45.33 3.00e-12 67.80
IUUC-Ame-011521 Astyanax mexicanus 54.70 7.00e-36 144.00
IUUC-Bta-013002 Bos taurus 94.24 0.00e+00 970.00
IUUC-Bol-016180 Brassica oleracea 44.00 3.00e-12 65.90
IUUC-Bra-017905 Brassica rapa 44.00 2.00e-12 66.20
IUUC-Cja-019945 Callithrix jacchus 71.38 0.00e+00 658.00
IUUC-Cfa-020533 Canis familiaris 74.35 0.00e+00 710.00
IUUC-Cpo-021643 Cavia porcellus 58.89 5.00e-136 478.00
IUUC-Csa-023638 Chlorocebus sabaeus 70.91 0.00e+00 685.00
IUUC-Cho-024319 Choloepus hoffmanni 70.31 0.00e+00 629.00
IUUC-Cin-025679 Ciona intestinalis 38.89 6.00e-21 94.70
IUUC-Csv-026052 Ciona savignyi 39.05 3.00e-19 88.60
IUUC-Dre-028519 Danio rerio 53.33 1.00e-35 144.00
IUUC-Dno-029294 Dasypus novemcinctus 72.17 0.00e+00 672.00
IUUC-Ete-032714 Echinops telfairi 50.26 6.00e-81 294.00
IUUC-Eca-033343 Equus caballus 76.26 0.00e+00 732.00
IUUC-Eeu-034633 Erinaceus europaeus 34.87 1.00e-22 100.00
IUUC-Fca-036251 Felis catus 76.01 0.00e+00 733.00
IUUC-Fal-037048 Ficedula albicollis 44.76 2.00e-73 270.00
IUUC-Fox-037926 Fusarium oxysporum 29.29 2.00e-07 49.70
IUUC-Gmo-039400 Gadus morhua 46.96 1.00e-30 125.00
IUUC-Gga-040444 Gallus gallus 40.74 6.00e-70 258.00
IUUC-Gac-041735 Gasterosteus aculeatus 51.69 1.00e-33 135.00
IUUC-Gma-044332 Glycine max 37.50 1.00e-13 70.90
IUUC-Ggo-044940 Gorilla gorilla 68.49 4.00e-135 474.00
IUUC-Hsa-046424 Homo sapiens 73.87 0.00e+00 670.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 70.77 0.00e+00 654.00
IUUC-Kpa-049137 Komagataella pastoris 34.52 2.00e-08 53.50
IUUC-Lch-050649 Latimeria chalumnae 39.88 6.00e-55 208.00
IUUC-Loc-051847 Lepisosteus oculatus 35.79 1.00e-46 181.00
IUUC-Laf-053938 Loxodonta africana 66.67 0.00e+00 681.00
IUUC-Mcc-055360 Macaca mulatta 70.56 0.00e+00 662.00
IUUC-Meu-056684 Macropus eugenii 47.92 7.00e-109 387.00
IUUC-Mtr-058007 Medicago truncatula 40.51 4.00e-13 69.30
IUUC-Mga-059699 Meleagris gallopavo 42.02 1.00e-68 253.00
IUUC-Mmr-060779 Microcebus murinus 73.65 0.00e+00 741.00
IUUC-Mdo-062225 Monodelphis domestica 52.48 1.00e-111 396.00
IUUC-Mmu-064239 Mus musculus 62.17 3.00e-151 528.00
IUUC-Mpu-066141 Mustela putorius furo 75.65 0.00e+00 741.00
IUUC-Mlu-067945 Myotis lucifugus 72.95 0.00e+00 694.00
IUUC-Nle-069769 Nomascus leucogenys 73.69 0.00e+00 686.00
IUUC-Opr-070905 Ochotona princeps 62.37 4.00e-165 574.00
IUUC-Ont-071477 Oreochromis niloticus 52.17 4.00e-33 135.00
IUUC-Oan-073531 Ornithorhynchus anatinus 45.23 2.00e-58 219.00
IUUC-Ocu-073832 Oryctolagus cuniculus 66.90 2.00e-174 605.00
IUUC-Ogl-077658 Oryza glaberrima 38.71 1.00e-11 63.90
IUUC-Ogu-078203 Oryza glumaepatula 39.73 3.00e-10 59.30
IUUC-Oin-079383 Oryza indica 38.71 1.00e-11 63.90
IUUC-Ome-081482 Oryza meridionalis 36.26 3.00e-11 63.20
IUUC-Oni-083025 Oryza nivara 38.71 1.00e-11 63.90
IUUC-Opu-083547 Oryza punctata 40.00 4.00e-11 62.40
IUUC-Oru-084946 Oryza rufipogon 33.64 2.00e-08 53.50
IUUC-Osa-085978 Oryza sativa 38.71 1.00e-11 63.90
IUUC-Ola-086478 Oryzias latipes 49.57 6.00e-32 129.00
IUUC-Oga-088318 Otolemur garnettii 72.52 0.00e+00 691.00
IUUC-Ptr-090516 Pan troglodytes 74.04 0.00e+00 695.00
IUUC-Pan-092302 Papio anubis 70.26 0.00e+00 657.00
IUUC-Psi-093604 Pelodiscus sinensis 42.90 8.00e-82 298.00
IUUC-Pfo-096441 Poecilia formosa 50.00 1.00e-32 134.00
IUUC-Pab-097729 Pongo abelii 73.17 0.00e+00 682.00
IUUC-Pop-099737 Populus trichocarpa 38.64 3.00e-11 64.30
IUUC-Pca-100552 Procavia capensis 57.73 2.00e-109 389.00
IUUC-Ppe-102024 Prunus persica 38.95 3.00e-12 67.80
IUUC-Pva-102780 Pteropus vampyrus 75.52 0.00e+00 739.00
IUUC-Rno-105461 Rattus norvegicus 61.82 1.00e-153 536.00
IUUC-Sha-106809 Sarcophilus harrisii 55.02 4.00e-134 471.00
IUUC-Sly-111317 Solanum lycopersicum 39.00 7.00e-16 78.60
IUUC-Stu-112783 Solanum tuberosum 35.51 4.00e-15 75.50
IUUC-Sar-113579 Sorex araneus 59.34 7.00e-153 533.00
IUUC-Sbi-113834 Sorghum bicolor 37.65 6.00e-12 65.10
IUUC-Tgu-117187 Taeniopygia guttata 66.33 2.00e-46 178.00
IUUC-Tru-118182 Takifugu rubripes 52.46 2.00e-34 140.00
IUUC-Tsy-119217 Tarsius syrichta 52.52 2.00e-54 206.00
IUUC-Tni-120205 Tetraodon nigroviridis 52.59 1.00e-34 139.00
IUUC-Tca-121416 Theobroma cacao 42.17 2.00e-13 69.70
IUUC-Tre-121992 Trichoderma reesei 27.27 2.00e-07 50.10
IUUC-Tvi-122557 Trichoderma virens 31.71 2.00e-05 43.90
IUUC-Tur-126688 Triticum urartu 34.18 6.00e-11 61.60
IUUC-Tbe-127622 Tupaia belangeri 72.43 0.00e+00 688.00
IUUC-Ttr-128988 Tursiops truncatus 82.90 0.00e+00 817.00
IUUC-Vpa-130302 Vicugna pacos 75.43 1.00e-145 509.00
IUUC-Vvi-131424 Vitis vinifera 40.96 1.00e-11 63.90
IUUC-Xtr-132196 Xenopus tropicalis 39.62 4.00e-64 239.00
Created Date 25-Jun-2017

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