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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-006817
Ensembl Protein ID AT4G02890.1
UniProt Accession P0CH33; O80715; P59263; Q38875; Q9LDJ2; Q9LYW1; Q9M0W3; Q9M1P9; Q9S7X3; UBQ11_ARATH
Genbank Protein ID AAD48980.1; CAB81047.1; AEE82468.1; AEE82469.1; AEE82470.1; AAK96565.1; AAL06940.1; AAL09770.1; AAM19968.1
Protein Name Polyubiquitin 11; Ubiquitin
Genbank Nucleotide ID AF162444; AL161502; CP002687; CP002687; CP002687; AY052661; AY054281; AY057530; AY098958
Gene Name UBQ14; UBQ11; At4g05050; C17L7.6; T32N4.13
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G02890 AT4G02890.1 AT4G02890.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/NEDD8 5.70e-125 408.7 153 228
ULD/UDP/UBQ/UBQ_PIM 1.50e-85 282.1 153 225
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
    m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
    89*************************************************************************9 PP
   


   ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
    m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++
   Q: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225
    99********************************************************************986 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Protein Sequence
(Fasta)
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-006817|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ACAAATTCAG ATTCCAAATT TCTCAAACTC TGAAATCGTT CTTTCAAATC TCTCAATCGG 60
GATCAAGGTA AATTTCTGGG TTCTTATTCA GTTTCTTCGA TTATTTTCCA TTCGATCGCA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-006817|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG ath:AT4G02890; ath:AT4G05050
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Bol-016425 Brassica oleracea 100.00 8.00e-130 455.00
IUUC-Cme-027207 Cyanidioschyzon merolae 93.51 6.00e-39 151.00
IUUC-Dor-031044 Dipodomys ordii 94.96 5.00e-74 268.00
IUUC-Mtr-057803 Medicago truncatula 100.00 5.00e-130 456.00
IUUC-Mga-059240 Meleagris gallopavo 93.83 3.00e-85 306.00
IUUC-Mac-065145 Musa acuminata 90.13 2.00e-72 263.00
IUUC-Opr-070947 Ochotona princeps 95.63 4.00e-125 439.00
IUUC-Pop-100050 Populus trichocarpa 100.00 8.00e-130 455.00
IUUC-Sha-107155 Sarcophilus harrisii 95.61 4.00e-124 436.00
Created Date 25-Jun-2017

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