iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115383

Ensembl Protein ID

ENSSSCP00000008493.2

UniProt Accession

F1RK43; F1RK43_PIG

Genbank Protein ID

ENSSSCP00000008493

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU914336

Gene Name

SLX4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000007954.2	ENSSSCT00000008717.2	ENSSSCP00000008493.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/ZnF/UBZ	1.40e-06	28.7	118	143

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/ZnF/UBZ

   S: 2    lvCPvCqkm...vdqtdfeeHlDeCl 24
           ++C++Cqk    +++t++e+H+++Cl
   Q: 118  FFCQICQKNlsaMNVTRREQHVNRCL 143
           89***********************8 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

SLPEAPGSSS QPPPPCLTAM VPSPSKPRAA ELVLQRMQQF KRVDPERLKH ASAGCSLEAT 60
PEEDDPKGPR EAVTAGNGSG PGLPATDSNT AVPLILQQEF GQEPAPTRDD SLEDKGLFFC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCTTGCCAG AGGCTCCTGG CAGCAGCTCG CAGCCCCCTC CTCCCTGTCT GACTGCAATG 60
GTGCCAAGTC CCTCCAAACC CCGGGCCGCA GAGCTGGTGC TACAGCGAAT GCAGCAGTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR000210--BTB/POZ_dom
IPR011333--SKP1/BTB/POZ
IPR018574--Structure-sp_endonuc_su_Slx4

PROSITE

PS50097--BTB

Pfam

PF00651--BTB
PF09494--Slx4

SMART

SM00225--BTB

Gene Ontology

GO:0030054--C:cell junction
GO:0005829--C:cytosol
GO:0070522--C:ERCC4-ERCC1 complex
GO:0048476--C:Holliday junction resolvase complex
GO:0000790--C:nuclear chromatin
GO:0000784--C:nuclear chromosome, telomeric region
GO:0005654--C:nucleoplasm
GO:0033557--C:Slx1-Slx4 complex
GO:0048257--F:3'-flap endonuclease activity
GO:0017108--F:5'-flap endonuclease activity
GO:0008821--F:crossover junction endodeoxyribonuclease activity
GO:0008047--F:enzyme activator activity
GO:0010792--P:DNA double-strand break processing involved in repair via single-strand annealing
GO:0006260--P:DNA replication
GO:0000724--P:double-strand break repair via homologous recombination
GO:0036297--P:interstrand cross-link repair
GO:0000706--P:meiotic DNA double-strand break processing
GO:1904357--P:negative regulation of telomere maintenance via telomere lengthening
GO:0006289--P:nucleotide-excision repair
GO:1904431--P:positive regulation of t-circle formation
GO:0000712--P:resolution of meiotic recombination intermediates
GO:0072429--P:response to intra-S DNA damage checkpoint signaling
GO:0090656--P:t-circle formation
GO:0061820--P:telomeric D-loop disassembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001225	Ailuropoda melanoleuca	63.63	0.00e+00	1375.00
IUUC-Apl-003261	Anas platyrhynchos	35.65	7.00e-160	558.00
IUUC-Aca-004455	Anolis carolinensis	70.91	5.00e-18	81.60
IUUC-Ame-010993	Astyanax mexicanus	37.84	2.00e-10	58.90
IUUC-Bta-013472	Bos taurus	65.42	0.00e+00	1425.00
IUUC-Cel-018663	Caenorhabditis elegans	36.36	3.00e-03	37.00
IUUC-Cja-019406	Callithrix jacchus	56.94	0.00e+00	1239.00
IUUC-Cfa-020129	Canis familiaris	61.66	0.00e+00	1256.00
IUUC-Cpo-021944	Cavia porcellus	54.04	0.00e+00	1195.00
IUUC-Csa-023941	Chlorocebus sabaeus	54.81	1.00e-157	550.00
IUUC-Cho-024847	Choloepus hoffmanni	66.67	3.00e-113	403.00
IUUC-Cin-025405	Ciona intestinalis	40.38	5.00e-05	41.60
IUUC-Csv-025916	Ciona savignyi	37.29	2.00e-06	45.80
IUUC-Dre-027764	Danio rerio	44.81	1.00e-39	159.00
IUUC-Dno-030083	Dasypus novemcinctus	58.11	0.00e+00	676.00
IUUC-Dor-031129	Dipodomys ordii	47.69	0.00e+00	797.00
IUUC-Dse-031510	Dothistroma septosporum	36.11	1.10e-01	32.30
IUUC-Ete-032536	Echinops telfairi	52.03	5.00e-82	299.00
IUUC-Eca-033407	Equus caballus	65.48	0.00e+00	1319.00
IUUC-Eeu-034473	Erinaceus europaeus	51.38	3.00e-51	197.00
IUUC-Fca-035730	Felis catus	62.97	0.00e+00	1455.00
IUUC-Fal-036850	Ficedula albicollis	45.91	5.00e-119	422.00
IUUC-Gmo-038677	Gadus morhua	40.09	9.00e-25	108.00
IUUC-Gga-041088	Gallus gallus	44.60	2.00e-119	424.00
IUUC-Gac-041824	Gasterosteus aculeatus	76.32	2.00e-13	68.90
IUUC-Ggo-045642	Gorilla gorilla	57.37	0.00e+00	1163.00
IUUC-Hsa-047035	Homo sapiens	57.96	0.00e+00	1258.00
IUUC-Itr-049010	Ictidomys tridecemlineatus	57.21	0.00e+00	1240.00
IUUC-Kpa-049328	Komagataella pastoris	25.00	9.30e-02	32.00
IUUC-Lch-050364	Latimeria chalumnae	41.69	3.00e-72	267.00
IUUC-Loc-052423	Lepisosteus oculatus	41.16	3.00e-39	157.00
IUUC-Laf-053910	Loxodonta africana	55.27	0.00e+00	1214.00
IUUC-Mcc-055883	Macaca mulatta	58.74	0.00e+00	1286.00
IUUC-Meu-056224	Macropus eugenii	46.67	1.00e-76	281.00
IUUC-Mpo-057392	Magnaporthe poae	23.85	1.30e+00	27.70
IUUC-Mga-059880	Meleagris gallopavo	44.15	1.00e-125	444.00
IUUC-Mvi-060510	Microbotryum violaceum	34.78	7.00e-05	42.70
IUUC-Mmr-061715	Microcebus murinus	58.73	0.00e+00	1342.00
IUUC-Mdo-062426	Monodelphis domestica	53.48	3.00e-173	603.00
IUUC-Mmu-063947	Mus musculus	60.24	0.00e+00	724.00
IUUC-Mpu-066184	Mustela putorius furo	66.23	0.00e+00	850.00
IUUC-Mlu-067533	Myotis lucifugus	64.34	0.00e+00	1449.00
IUUC-Nle-069204	Nomascus leucogenys	62.19	0.00e+00	757.00
IUUC-Opr-070377	Ochotona princeps	62.94	0.00e+00	704.00
IUUC-Ont-072551	Oreochromis niloticus	40.26	1.00e-38	155.00
IUUC-Oan-073350	Ornithorhynchus anatinus	53.62	3.00e-85	308.00
IUUC-Ocu-074915	Oryctolagus cuniculus	62.90	0.00e+00	711.00
IUUC-Ola-087360	Oryzias latipes	46.90	2.00e-32	132.00
IUUC-Oga-089106	Otolemur garnettii	56.51	0.00e+00	1094.00
IUUC-Oar-089289	Ovis aries	64.89	0.00e+00	967.00
IUUC-Ptr-091469	Pan troglodytes	58.00	0.00e+00	1241.00
IUUC-Pan-091841	Papio anubis	56.58	0.00e+00	1013.00
IUUC-Psi-093842	Pelodiscus sinensis	46.18	6.00e-114	406.00
IUUC-Pma-094732	Petromyzon marinus	58.82	7.00e-09	53.50
IUUC-Pfo-097299	Poecilia formosa	39.82	8.00e-36	146.00
IUUC-Pab-098271	Pongo abelii	58.57	0.00e+00	1235.00
IUUC-Pca-100721	Procavia capensis	50.59	0.00e+00	678.00
IUUC-Pva-102276	Pteropus vampyrus	66.46	0.00e+00	1625.00
IUUC-Rno-105619	Rattus norvegicus	60.05	0.00e+00	747.00
IUUC-Sha-106722	Sarcophilus harrisii	43.73	0.00e+00	882.00
IUUC-Sar-113673	Sorex araneus	65.09	1.00e-64	242.00
IUUC-Sre-115039	Sporisorium reilianum	31.48	1.00e-03	37.00
IUUC-Tgu-117243	Taeniopygia guttata	45.45	8.00e-76	276.00
IUUC-Tru-118092	Takifugu rubripes	73.68	1.00e-20	92.80
IUUC-Tsy-119362	Tarsius syrichta	53.46	2.00e-128	454.00
IUUC-Tni-120380	Tetraodon nigroviridis	75.44	2.00e-21	95.10
IUUC-Tbe-127404	Tupaia belangeri	46.99	6.00e-106	379.00
IUUC-Ttr-128317	Tursiops truncatus	70.81	0.00e+00	1601.00
IUUC-Uma-129640	Ustilago maydis	34.55	2.00e-04	39.30
IUUC-Xtr-132533	Xenopus tropicalis	39.82	3.00e-87	317.00
IUUC-Xma-134059	Xiphophorus maculatus	38.49	3.00e-36	147.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence