iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrt 32
           gH+dsvt+++f +d ++vs+sdD t+k+WDlr 
   Q: 363  GHQDSVTSVSFnTDYRIVSSSDDATVKIWDLRN 395
           8**********77799**************986 PP

UBD/Beta-Prp

   S: 23   sllatgsrdgtikvwdvttgkl......lrslsgheae............vtavkfspdgkilvtgseD.rtikvwdlstgkcvhtlkghedsvlslsfs 103
            llat+s d+++ +w+v + ++       ++      e            v   +f +++      s D + i+v       +v+ l+gh + v ++++ 
   Q: 208  LLLATASGDESTHIWKVPSNNApsdhssEEE------EehhrdpnnllgvVEHNRFTSSS----EKS-DgHRIRV-------PVMRLTGHRAPVSCCEWL 289
           5899***************999544443333......25555556655544444444443....233.3589999.......****************** PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.ktgkllrtltgghtdsvyslsfdsngkelvsgsldg 202
           + g+ +v++s+drt++vwd+e+g++++ +lsgh++  n+ ++h++++l+ ++s+D+t rlWd  +  + +  ++g h+dsv+s+sf+ +  ++vs s+d 
   Q: 290  AGGQQMVTASWDRTANVWDVEKGEVVN-ILSGHESELNHCSTHSNQKLVLTSSKDSTFRLWDFrEAIQSVAVFQG-HQDSVTSVSFNTD-YRIVSSSDDA 386
           *99************************.**********************************9566799*****9.************7.8********* PP
   S: 203  tvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn..ssvisvavlsfg.dnvlvlgsedskvniwklkk 296
           tvk+wdl++ ++  + +  +++ ++v+ s+ +  ++   + + +ri+dl  + l ++ +++     v+++a l+    n+l+++++d  v  wk+++
   Q: 387  TVKIWDLRNMRTPLATIRLSSPANRVAISKSHPVIAIPMDNRHVRIYDLNGNRLPRMPNRRCheRMVTCCAWLDEHpANNLLTAGFDRMVAAWKVNT 483
           ********99999999999**********9999999988999******98888777776644558899999999889*****************975 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MPQSENSKDA EKEKVMRSRR GTVDTEISGA LTVLQSSLDV DDAPYRARLY QLFGHIEKEF 60
DTLYAENCAL SVRARIVQLT QTEGEAANVV AQEVFGVQES GKSSRKAIQM GQKLRTALRG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGGGTCAATG CCACAATCGG AGAATTCAAA AGATGCCGAA AAAGAGAAGG TGATGCGTTC 60
ACGACGTGGT ACTGTCGATA CAGAGATCAG CGGAGCACTC ACAGTTCTTC AGAGCTCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001249	Ailuropoda melanoleuca	42.26	3.00e-95	341.00
IUUC-Apl-003647	Anas platyrhynchos	41.33	8.00e-93	332.00
IUUC-Aca-004759	Anolis carolinensis	41.58	5.00e-94	337.00
IUUC-Ame-011103	Astyanax mexicanus	28.34	1.00e-33	136.00
IUUC-Bta-012718	Bos taurus	41.37	1.00e-92	332.00
IUUC-Cja-019492	Callithrix jacchus	42.39	5.00e-96	343.00
IUUC-Cfa-020199	Canis familiaris	42.54	4.00e-96	343.00
IUUC-Cpo-022500	Cavia porcellus	38.18	3.00e-83	301.00
IUUC-Csa-023567	Chlorocebus sabaeus	42.61	8.00e-97	346.00
IUUC-Cho-025071	Choloepus hoffmanni	40.54	2.00e-44	172.00
IUUC-Cin-025460	Ciona intestinalis	36.58	1.00e-70	259.00
IUUC-Csv-026042	Ciona savignyi	37.58	3.00e-75	274.00
IUUC-Dre-028214	Danio rerio	41.48	9.00e-93	332.00
IUUC-Dno-029826	Dasypus novemcinctus	42.96	2.00e-90	324.00
IUUC-Dor-030967	Dipodomys ordii	42.48	2.00e-83	301.00
IUUC-Dme-031936	Drosophila melanogaster	36.86	1.00e-82	298.00
IUUC-Ete-032452	Echinops telfairi	41.37	3.00e-93	334.00
IUUC-Eca-033278	Equus caballus	42.05	8.00e-96	342.00
IUUC-Eeu-034592	Erinaceus europaeus	37.39	2.00e-72	264.00
IUUC-Fca-036431	Felis catus	42.26	2.00e-96	344.00
IUUC-Fal-037149	Ficedula albicollis	42.00	4.00e-96	343.00
IUUC-Gmo-038476	Gadus morhua	40.45	3.00e-85	307.00
IUUC-Gga-041099	Gallus gallus	41.45	9.00e-94	335.00
IUUC-Gac-042110	Gasterosteus aculeatus	39.78	1.00e-85	309.00
IUUC-Ggo-044683	Gorilla gorilla	40.77	2.00e-90	324.00
IUUC-Hsa-046658	Homo sapiens	43.14	4.00e-96	343.00
IUUC-Itr-048870	Ictidomys tridecemlineatus	42.52	2.00e-96	344.00
IUUC-Lch-050571	Latimeria chalumnae	38.14	7.00e-92	329.00
IUUC-Loc-052652	Lepisosteus oculatus	39.50	6.00e-90	323.00
IUUC-Laf-053712	Loxodonta africana	42.05	3.00e-95	340.00
IUUC-Mcc-055521	Macaca mulatta	42.61	8.00e-97	346.00
IUUC-Meu-056324	Macropus eugenii	39.33	1.00e-86	312.00
IUUC-Mga-060114	Meleagris gallopavo	41.33	6.00e-94	336.00
IUUC-Mmr-061176	Microcebus murinus	42.39	4.00e-96	343.00
IUUC-Mdo-061888	Monodelphis domestica	41.56	3.00e-94	337.00
IUUC-Mmu-063977	Mus musculus	42.27	5.00e-97	346.00
IUUC-Mpu-066220	Mustela putorius furo	43.67	1.00e-47	182.00
IUUC-Mlu-068155	Myotis lucifugus	42.05	4.00e-96	343.00
IUUC-Nle-069964	Nomascus leucogenys	42.61	4.00e-97	347.00
IUUC-Opr-070925	Ochotona princeps	35.49	2.00e-36	145.00
IUUC-Ont-071816	Oreochromis niloticus	39.91	4.00e-90	323.00
IUUC-Oan-072952	Ornithorhynchus anatinus	42.22	3.00e-96	344.00
IUUC-Ocu-073913	Oryctolagus cuniculus	42.17	2.00e-96	344.00
IUUC-Ola-087068	Oryzias latipes	40.52	5.00e-91	327.00
IUUC-Oga-087945	Otolemur garnettii	42.08	3.00e-96	343.00
IUUC-Oar-089854	Ovis aries	41.37	1.00e-92	332.00
IUUC-Ptr-091486	Pan troglodytes	43.14	3.00e-96	343.00
IUUC-Pan-091738	Papio anubis	42.61	8.00e-97	346.00
IUUC-Psi-093953	Pelodiscus sinensis	41.33	6.00e-93	333.00
IUUC-Pma-094560	Petromyzon marinus	41.39	2.00e-94	338.00
IUUC-Pfo-097222	Poecilia formosa	40.57	7.00e-91	326.00
IUUC-Pab-098778	Pongo abelii	41.59	2.00e-92	331.00
IUUC-Pca-100852	Procavia capensis	40.44	2.00e-88	318.00
IUUC-Pva-103130	Pteropus vampyrus	56.80	6.00e-40	157.00
IUUC-Rno-105848	Rattus norvegicus	39.52	2.00e-88	317.00
IUUC-Sha-106750	Sarcophilus harrisii	41.78	5.00e-95	340.00
IUUC-Sar-113749	Sorex araneus	38.50	5.00e-78	283.00
IUUC-Ssc-115691	Sus scrofa	41.92	4.00e-92	330.00
IUUC-Tgu-117365	Taeniopygia guttata	41.61	3.00e-88	317.00
IUUC-Tru-118335	Takifugu rubripes	39.87	3.00e-87	314.00
IUUC-Tsy-118973	Tarsius syrichta	36.71	2.00e-46	179.00
IUUC-Tni-120545	Tetraodon nigroviridis	40.04	2.00e-90	325.00
IUUC-Tbe-127976	Tupaia belangeri	38.20	8.00e-59	219.00
IUUC-Ttr-128472	Tursiops truncatus	40.93	1.00e-88	319.00
IUUC-Xtr-132621	Xenopus tropicalis	42.62	3.00e-91	327.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence