iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131332

UUCD1 version

UUC-ViV-00898

Ensembl Protein ID

VIT_07s0005g01420.t01

UniProt Accession

F6HZ98; F6HZ98_VITVI

Genbank Protein ID

CCB60013.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN596502

Gene Name

VIT_07s0005g01420

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_07s0005g01420	VIT_07s0005g01420.t01	VIT_07s0005g01420.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-24	85.7	324	359
UBD/Beta-Prp	1.90e-45	155.9	236	501

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf....sd.tllvsGsdDgtikvWDlr 31
           gHt+ vt++af    s+   l+s+sdDg++++WD r
   Q: 324  GHTGAVTAIAFsprpSSvYQLLSSSDDGSCRIWDAR 359
           8************9755788**************76 PP

UBD/Beta-Prp

   S: 3    ktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtl 90
           k+l+gh+++v +   f +++++++tgs+d+ +k+w+++t  +l+s  ghe+ +t++  s++  + +++s+D +i+vw l +g ++++l
   Q: 236  KKLRGHRDAVYC-AIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLVASASNDFIIRVWRLPDGLPISVL 322
           678889887777.999*********************************************99************************* PP
   S: 91   kghedsvlslsfsp..sg.dklvsGshdrtirvwdletgqclee........................tlsghdgvvncvvvhpdgnl 151
           +gh+  v++++fsp  s+ + l+s s+d   r+wd +  qc+                           + ++++ + c +++ +g +
   Q: 323  RGHTGAVTAIAFSPrpSSvYQLLSSSDDGSCRIWDARFSQCSPRiylpkppdavagknsvpsmngtssSNGPQSHQILCCAFNASGTV 410
           **************99555***********************************************9989999999************ PP
   S: 152  lvsGslDrtvrlWdl.........ktgkllrtltgghtdsvyslsfdsng..........................kelvsgsldgtv 204
           +v+Gs D++ r+W+          + +  ++ l+g h+++v+ ++f+                               +v++s+dg+ 
   Q: 411  FVTGSSDTFARVWSAcksstddseQPNHEIDVLSG-HENDVNYVQFSACAgasrssvsdtfkeeslpkfknswfchDNIVTCSRDGSA 497
           **************9***99977555555556677.*********555444555556666666669999******************* PP
   S: 205  klwd 208
           ++w 
   Q: 498  IIWI 501
           ***5 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MDFQKCKSSS EAPSLSMVPL SFSNKLHERP QCQERNTDHV VADVDIDLRE VYFLIMHFLS 60
AGPCQKTFGQ FWNELLEHEL LPRRYHAWYS RSGACSGDEN DNGFSFPLGY NNLVERYPHI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTCAAGATA GTATATCTCC TCTCTACTCT TCAACATCGA ATCACTTGAA ACTCTCTCCT 60
TTCCATTTGA TTGATTTGTT TTCATTTTTT CATTTGTGCA AGTCTTCTTT GCCTCCCTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR001487--Bromodomain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00439--Bromodomain
PF00400--WD40

SMART

SM00297--BROMO
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0007010--P:cytoskeleton organization
GO:0008360--P:regulation of cell shape
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001881	Ailuropoda melanoleuca	31.28	2.00e-75	277.00
IUUC-Apl-003700	Anas platyrhynchos	31.41	2.00e-67	251.00
IUUC-Aly-006517	Arabidopsis lyrata	58.33	0.00e+00	1588.00
IUUC-Ath-006577	Arabidopsis thaliana	73.23	0.00e+00	1229.00
IUUC-Bol-016525	Brassica oleracea	57.67	0.00e+00	1562.00
IUUC-Cja-018868	Callithrix jacchus	32.02	7.00e-83	302.00
IUUC-Cre-023003	Chlamydomonas reinhardtii	34.53	4.00e-35	142.00
IUUC-Csa-023618	Chlorocebus sabaeus	32.24	1.00e-82	301.00
IUUC-Dor-030195	Dipodomys ordii	33.98	1.00e-32	135.00
IUUC-Dme-031752	Drosophila melanogaster	29.60	8.00e-74	272.00
IUUC-Eeu-034871	Erinaceus europaeus	29.87	1.00e-41	165.00
IUUC-Fca-036099	Felis catus	31.28	7.00e-76	279.00
IUUC-Fal-037307	Ficedula albicollis	30.74	1.00e-77	285.00
IUUC-Gga-040798	Gallus gallus	31.82	2.00e-78	287.00
IUUC-Hsa-046757	Homo sapiens	32.24	1.00e-82	301.00
IUUC-Loc-052672	Lepisosteus oculatus	33.19	7.00e-82	298.00
IUUC-Meu-056321	Macropus eugenii	29.36	2.00e-54	207.00
IUUC-Mtr-057637	Medicago truncatula	65.42	0.00e+00	1271.00
IUUC-Mmu-063772	Mus musculus	32.10	1.00e-82	301.00
IUUC-Ont-072221	Oreochromis niloticus	33.81	2.00e-83	304.00
IUUC-Ola-086648	Oryzias latipes	33.33	2.00e-82	300.00
IUUC-Oar-090042	Ovis aries	31.73	1.00e-75	278.00
IUUC-Pan-092734	Papio anubis	32.24	2.00e-82	301.00
IUUC-Ppa-095793	Physcomitrella patens	58.24	0.00e+00	887.00
IUUC-Pfo-096191	Poecilia formosa	33.71	3.00e-80	293.00
IUUC-Pab-098402	Pongo abelii	32.24	1.00e-82	301.00
IUUC-Pop-099672	Populus trichocarpa	70.47	0.00e+00	1333.00
IUUC-Ppe-101283	Prunus persica	62.23	0.00e+00	1705.00
IUUC-Pva-102512	Pteropus vampyrus	31.43	1.00e-75	278.00
IUUC-Sly-111348	Solanum lycopersicum	66.03	0.00e+00	1185.00
IUUC-Ssc-115461	Sus scrofa	31.38	3.00e-70	260.00
IUUC-Tru-117625	Takifugu rubripes	33.13	2.00e-80	293.00
IUUC-Tsy-119003	Tarsius syrichta	29.32	7.00e-63	236.00
IUUC-Tni-120716	Tetraodon nigroviridis	32.81	1.00e-81	298.00
IUUC-Tca-121615	Theobroma cacao	72.26	0.00e+00	1361.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence