iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMUSG00000064293.14	ENSMUST00000113261.8	ENSMUSP00000108886.2
ENSMUSG00000064293.14	ENSMUST00000089208.8	ENSMUSP00000086616.2
ENSMUSG00000064293.14	ENSMUST00000113258.7	ENSMUSP00000108883.1
ENSMUSG00000064293.14	ENSMUST00000079416.5	ENSMUSP00000078385.5

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
AREsite	circBase	miRTarBase	microRNA
TRANSFAC	RepTar	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus	PHOSIDA
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	28.57	2.00e+00	31.20	IUUC-Ath-007191

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Mus musculus

Functional Description
(View)

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis.

Protein Sequence
(Fasta)

MRLPWELLVL QSFMLCLADD YTLHGPVFVQ EPSHVMFPLD SEEKKVKLSC EVKGNPKPHI 60
RWKINGTDVD IGMDFRYSVV DGSLLINNPN KTQDAGTYQC IATNSFGTIV SREAKLQFAY 120

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Nucleotide Sequence
(Fasta)

TCCCTATGAG TCTTCCGCTA GTGGCTGCAA AGGAACCGCT GCAGCCTGAA CTCAGGTGCG 60
CCGGGTTTTG AGAGCTGCCA CCAGCACAGG GAGGGAGAGG AACGCGCGGC AGCCACAGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0130--Cell adhesion
KW-1003--Cell membrane
KW-0181--Complete proteome
KW-1015--Disulfide bond
KW-0325--Glycoprotein
KW-0336--GPI-anchor
KW-0393--Immunoglobulin domain
KW-0449--Lipoprotein
KW-0472--Membrane
KW-1185--Reference proteome
KW-0677--Repeat
KW-0964--Secreted
KW-0732--Signal

Interpro

IPR033007--Contactin-4
IPR003961--FN3_dom
IPR007110--Ig-like_dom
IPR013783--Ig-like_fold
IPR013098--Ig_I-set
IPR003599--Ig_sub
IPR003598--Ig_sub2

PROSITE

PS50853--FN3
PS50835--IG_LIKE

Pfam

PF00041--fn3
PF07679--I-set

SMART

SM00060--FN3
SM00409--IG
SM00408--IGc2

Gene Ontology

GO:0031225--C:anchored component of membrane
GO:0005576--C:extracellular region
GO:0005886--C:plasma membrane
GO:0007411--P:axon guidance
GO:0007420--P:brain development
GO:0007155--P:cell adhesion
GO:0045665--P:negative regulation of neuron differentiation
GO:0007399--P:nervous system development
GO:0031175--P:neuron projection development

KEGG

mmu:269784

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-005192	Anolis carolinensis	33.33	1.10e-02	35.40
IUUC-Ath-007191	Arabidopsis thaliana	28.57	1.00e-01	31.20
IUUC-Ame-010608	Astyanax mexicanus	21.72	4.00e-06	47.00
IUUC-Cel-018688	Caenorhabditis elegans	24.10	7.20e-02	32.70
IUUC-Cho-024489	Choloepus hoffmanni	25.14	2.00e-04	41.20
IUUC-Dor-030276	Dipodomys ordii	65.61	0.00e+00	691.00
IUUC-Ete-032600	Echinops telfairi	29.55	1.00e-03	38.10
IUUC-Eeu-034788	Erinaceus europaeus	23.24	8.00e-05	42.70
IUUC-Fal-037374	Ficedula albicollis	27.76	2.00e-13	72.80
IUUC-Gac-041963	Gasterosteus aculeatus	34.67	7.00e-06	46.20
IUUC-Mmr-060672	Microcebus murinus	59.88	0.00e+00	635.00
IUUC-Opr-070239	Ochotona princeps	63.71	0.00e+00	709.00
IUUC-Ont-072012	Oreochromis niloticus	28.81	5.00e-36	149.00
IUUC-Ocu-074468	Oryctolagus cuniculus	24.90	7.00e-24	107.00
IUUC-Ola-086554	Oryzias latipes	24.23	4.00e-05	43.50
IUUC-Oar-090012	Ovis aries	23.78	3.00e-05	43.90
IUUC-Ptr-090547	Pan troglodytes	21.88	2.00e-09	57.00
IUUC-Pan-092262	Papio anubis	26.37	7.00e-07	49.70
IUUC-Pva-102837	Pteropus vampyrus	28.96	1.00e-26	115.00
IUUC-Sar-113054	Sorex araneus	23.86	5.00e-04	40.00
IUUC-Ssc-116110	Sus scrofa	23.37	5.00e-05	43.10
IUUC-Tsy-119591	Tarsius syrichta	30.95	2.00e+00	28.10

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence