iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mtr-058148

Ensembl Protein ID

KEH44233

UniProt Accession

A0A072VS14; A0A072VS14_MEDTR

Genbank Protein ID

KEH44233.1

Protein Name

RAD23 UV excision repair family protein

Genbank Nucleotide ID

CM001217

Gene Name

MTR_1g111090

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MTR_1g111090	KEH44233	KEH44233

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.20e-22	80.7	162	203
ULD/UDP/UBQ/UBQ_PIM	6.40e-26	91.5	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e  ++q+ +MG   +dr+++++aLraa+nn+e+AveyL++g
   Q: 162  LEGTVQQILDMGggsWDRDTVIRALRAAFNNPERAVEYLYSG 203
           6788***********************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mk++vktlkg++fe+ev+++dt++++K++i++++g   +p++qq LI++Gk+LkD ttL+e+++ ++s+++++++ksk
   Q: 1    MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGvdvYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSK 78
           99*********************************88889***********************************997 PP

Organism

Medicago truncatula

Protein Sequence
(Fasta)

MKVFVKTLKG THFEIEVTPQ DTISAVKKNI ETVQGVDVYP AAQQMLIHQG KVLKDGTTLE 60
ENKVAENSFI VIMLSKSKPA SGEGSTTSNA PPAKAPQTSA APTSTPPVSV SPQAPAATAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAGAATCCA AATCCTTAAT TTTAACCACT TCACCCATAG TTTACAATCA TACACAAAAA 60
TCTAGCTCAC TCTCCACTTT CAACACTCAA TCATAACCAA ACCCCACCTC TTATCCATAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

mtr:MTR_1g111090

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000126	Aegilops tauschii	60.64	5.00e-76	277.00
IUUC-Aml-001195	Ailuropoda melanoleuca	38.22	4.00e-30	125.00
IUUC-Atr-003116	Amborella trichopoda	79.05	2.00e-98	352.00
IUUC-Apl-003371	Anas platyrhynchos	37.88	1.00e-31	130.00
IUUC-Aca-004599	Anolis carolinensis	35.69	3.00e-27	115.00
IUUC-Aly-005498	Arabidopsis lyrata	79.13	5.00e-104	370.00
IUUC-Ath-006688	Arabidopsis thaliana	73.81	1.00e-98	352.00
IUUC-Ago-007830	Ashbya gossypii	30.81	1.00e-15	76.60
IUUC-Bci-013933	Botrytis cinerea	38.21	6.00e-25	107.00
IUUC-Bdi-014253	Brachypodium distachyon	60.30	9.00e-113	399.00
IUUC-Bol-015641	Brassica oleracea	78.26	4.00e-97	347.00
IUUC-Bra-017983	Brassica rapa	69.42	1.00e-128	452.00
IUUC-Cja-018772	Callithrix jacchus	38.76	5.00e-30	124.00
IUUC-Cfa-020683	Canis familiaris	38.61	8.00e-30	124.00
IUUC-Cpo-022145	Cavia porcellus	39.68	1.00e-32	133.00
IUUC-Csa-023714	Chlorocebus sabaeus	39.00	2.00e-31	129.00
IUUC-Cho-024814	Choloepus hoffmanni	39.82	6.00e-18	84.30
IUUC-Cme-027260	Cyanidioschyzon merolae	26.13	3.00e-24	105.00
IUUC-Dre-028369	Danio rerio	36.61	8.00e-37	147.00
IUUC-Dno-029543	Dasypus novemcinctus	39.08	4.00e-31	128.00
IUUC-Eca-034243	Equus caballus	38.37	2.00e-31	129.00
IUUC-Fca-035679	Felis catus	38.37	5.00e-32	131.00
IUUC-Fal-037148	Ficedula albicollis	37.12	4.00e-31	128.00
IUUC-Gac-042298	Gasterosteus aculeatus	33.77	4.00e-40	157.00
IUUC-Gma-043937	Glycine max	89.11	5.00e-121	427.00
IUUC-Ggo-045125	Gorilla gorilla	39.00	4.00e-31	128.00
IUUC-Hsa-046519	Homo sapiens	39.00	4.00e-31	128.00
IUUC-Hvu-047832	Hordeum vulgare	66.93	3.00e-87	314.00
IUUC-Lch-050553	Latimeria chalumnae	37.20	4.00e-27	115.00
IUUC-Loc-051748	Lepisosteus oculatus	36.65	1.00e-31	130.00
IUUC-Laf-054293	Loxodonta africana	38.76	1.00e-30	126.00
IUUC-Mcc-055600	Macaca mulatta	39.00	4.00e-31	127.00
IUUC-Mmr-061159	Microcebus murinus	38.46	6.00e-31	127.00
IUUC-Mmu-063258	Mus musculus	36.47	6.00e-33	134.00
IUUC-Mac-065180	Musa acuminata	67.68	1.00e-127	448.00
IUUC-Mpu-066389	Mustela putorius furo	38.61	1.00e-29	123.00
IUUC-Mlu-067999	Myotis lucifugus	38.08	1.00e-30	126.00
IUUC-Nle-069655	Nomascus leucogenys	39.00	3.00e-31	128.00
IUUC-Opr-070234	Ochotona princeps	44.64	1.00e-09	56.60
IUUC-Ocu-074831	Oryctolagus cuniculus	37.45	7.00e-30	124.00
IUUC-Oba-075392	Oryza barthii	63.89	4.00e-88	317.00
IUUC-Obr-076631	Oryza brachyantha	60.54	7.00e-109	386.00
IUUC-Ogl-077021	Oryza glaberrima	59.85	6.00e-111	393.00
IUUC-Ogu-078883	Oryza glumaepatula	63.89	3.00e-88	318.00
IUUC-Oin-079817	Oryza indica	63.49	8.00e-88	316.00
IUUC-Olo-080929	Oryza longistaminata	63.49	1.00e-87	315.00
IUUC-Ome-081866	Oryza meridionalis	63.89	3.00e-88	318.00
IUUC-Oni-083092	Oryza nivara	63.49	8.00e-88	316.00
IUUC-Opu-083756	Oryza punctata	66.67	7.00e-91	326.00
IUUC-Oru-084816	Oryza rufipogon	63.49	8.00e-88	316.00
IUUC-Osa-086112	Oryza sativa	63.49	8.00e-88	316.00
IUUC-Oga-088023	Otolemur garnettii	38.31	1.00e-30	127.00
IUUC-Ptr-091165	Pan troglodytes	39.00	5.00e-31	127.00
IUUC-Pan-092009	Papio anubis	38.93	1.00e-29	123.00
IUUC-Psi-093477	Pelodiscus sinensis	39.84	4.00e-26	111.00
IUUC-Pab-097868	Pongo abelii	39.00	7.00e-31	127.00
IUUC-Pop-099642	Populus trichocarpa	69.04	2.00e-135	474.00
IUUC-Pva-102137	Pteropus vampyrus	38.61	4.00e-32	131.00
IUUC-Pgr-103618	Puccinia graminis	33.82	2.00e-23	102.00
IUUC-Ptt-103717	Puccinia triticina	46.15	9.00e-25	107.00
IUUC-Rno-104844	Rattus norvegicus	35.85	6.00e-33	134.00
IUUC-Sha-107073	Sarcophilus harrisii	38.52	2.00e-28	119.00
IUUC-Sit-110235	Setaria italica	66.40	9.00e-85	306.00
IUUC-Sly-111480	Solanum lycopersicum	70.28	4.00e-143	499.00
IUUC-Stu-112054	Solanum tuberosum	68.01	6.00e-136	476.00
IUUC-Sar-112925	Sorex araneus	38.62	2.00e-27	116.00
IUUC-Sbi-113871	Sorghum bicolor	57.32	3.00e-106	377.00
IUUC-Ssc-116329	Sus scrofa	37.98	1.00e-31	130.00
IUUC-Tsy-118836	Tarsius syrichta	39.82	3.00e-17	82.00
IUUC-Tni-120493	Tetraodon nigroviridis	32.99	7.00e-44	170.00
IUUC-Tca-121661	Theobroma cacao	79.76	2.00e-102	365.00
IUUC-Tae-125230	Triticum aestivum	59.61	3.00e-102	364.00
IUUC-Tur-126101	Triticum urartu	60.28	1.00e-75	276.00
IUUC-Tbe-127493	Tupaia belangeri	39.82	8.00e-18	84.30
IUUC-Ttr-128464	Tursiops truncatus	37.98	2.00e-31	129.00
IUUC-Vda-129946	Verticillium dahliae	45.45	3.00e-20	92.00
IUUC-Vpa-130357	Vicugna pacos	36.36	8.00e-17	80.50
IUUC-Vvi-131039	Vitis vinifera	77.91	1.00e-106	379.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence