iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007273

UUCD1 version

UUC-ArT-01077

Ensembl Protein ID

AT3G18140.1

UniProt Accession

Q9LV27; Q9LV27_ARATH

Genbank Protein ID

AAM65008.1; AAN86145.1; AEE76052.1; BAB02026.1

Protein Name

Putative WD-repeat protein; Transducin/WD40 repeat-like superfamily protein; WD-repeat protein, putative

Genbank Nucleotide ID

AY087463; BT002312; CP002686; AB020749

Gene Name

LST8-1; Lethal with Sec Thirteen 8-1; At3g18140

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G18140	AT3G18140.1	AT3G18140.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.60e-37	124.6	77	112
UBD/Beta-Prp	8.20e-53	180.4	165	304

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           Ht+ v ++ f  d + + sGs Dgt+k+WDlr   +
   Q: 77   HTNNVMAVGFqCDaKWMYSGSEDGTVKIWDLRAPGC 112
           8999999999988999***************98877 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl.......lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           ++++++  d+++++++  +gt  vw++ +gk        l++l+ h++ +  + +sp  k+l+t+s+D+t+k+w+++ +k   +l+gh++ v+++ fs
   Q: 165  VRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQtmtefepLHKLQAHNGHILKCLLSPANKYLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCVFS 262
           55566777999******************9999***************************************************************** PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvh 146
            +g++lv++s+d t+r+w ++ g++++ + +gh++++ c ++h
   Q: 263  VDGEFLVTASSDMTARLWSMPAGKEVK-VYQGHHKATVCCALH 304
           ***************************.999999999998877 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL 60
FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG TVKIWDLRAP GCQKEYESVA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCCCGCGT TAATTAATTA TGAGAAAAGC TTGGTAAAAA CCCTATTTTT CTTCTTCTCT 60
TCAATTTACA GTTCTCTGCA CCTTTTTCTT TCCCCTGTTT TTTGATCCTC AATCACCAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005768--C:endosome
GO:0016020--C:membrane
GO:0031931--C:TORC1 complex
GO:0031932--C:TORC2 complex
GO:0048571--P:long-day photoperiodism
GO:0032956--P:regulation of actin cytoskeleton organization
GO:1900088--P:regulation of inositol biosynthetic process
GO:1900091--P:regulation of raffinose biosynthetic process
GO:0031929--P:TOR signaling

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000595	Aegilops tauschii	83.82	8.00e-160	555.00
IUUC-Aml-001813	Ailuropoda melanoleuca	45.34	3.00e-78	284.00
IUUC-Atr-002512	Amborella trichopoda	84.14	7.00e-160	555.00
IUUC-Apl-003495	Anas platyrhynchos	42.70	5.00e-60	223.00
IUUC-Aca-004613	Anolis carolinensis	46.62	2.00e-80	291.00
IUUC-Aly-006340	Arabidopsis lyrata	99.34	0.00e+00	639.00
IUUC-Ago-007737	Ashbya gossypii	52.98	2.00e-95	341.00
IUUC-Acl-008090	Aspergillus clavatus	53.59	2.00e-69	255.00
IUUC-Afl-008490	Aspergillus flavus	48.47	3.00e-50	191.00
IUUC-Afu-009060	Aspergillus fumigatus	51.57	1.00e-62	233.00
IUUC-Ani-009251	Aspergillus nidulans	53.59	3.00e-69	254.00
IUUC-Ang-009528	Aspergillus niger	51.44	6.00e-87	313.00
IUUC-Aor-010005	Aspergillus oryzae	50.16	1.00e-81	295.00
IUUC-Ate-010423	Aspergillus terreus	54.01	5.00e-70	257.00
IUUC-Ame-011752	Astyanax mexicanus	45.66	3.00e-79	287.00
IUUC-Bgr-012299	Blumeria graminis	46.75	2.00e-80	291.00
IUUC-Bta-013007	Bos taurus	45.95	2.00e-78	285.00
IUUC-Bci-013987	Botrytis cinerea	49.68	3.00e-89	321.00
IUUC-Bdi-014082	Brachypodium distachyon	83.82	1.00e-159	554.00
IUUC-Bol-015088	Brassica oleracea	97.38	0.00e+00	628.00
IUUC-Bra-016682	Brassica rapa	66.06	1.00e-126	445.00
IUUC-Cel-018473	Caenorhabditis elegans	27.46	4.00e-33	134.00
IUUC-Cja-019216	Callithrix jacchus	41.76	4.00e-58	217.00
IUUC-Cfa-021229	Canis familiaris	45.34	1.00e-78	285.00
IUUC-Cpo-022270	Cavia porcellus	45.66	3.00e-79	287.00
IUUC-Cre-022742	Chlamydomonas reinhardtii	66.89	4.00e-128	450.00
IUUC-Csa-023275	Chlorocebus sabaeus	45.66	3.00e-79	287.00
IUUC-Cin-025588	Ciona intestinalis	43.04	2.00e-76	278.00
IUUC-Csv-026252	Ciona savignyi	44.09	4.00e-77	280.00
IUUC-Cgl-026418	Colletotrichum gloeosporioides	50.64	9.00e-88	316.00
IUUC-Cne-027013	Cryptococcus neoformans	52.13	7.00e-91	326.00
IUUC-Cme-027131	Cyanidioschyzon merolae	36.69	2.00e-66	245.00
IUUC-Dre-028424	Danio rerio	46.30	4.00e-80	290.00
IUUC-Dno-029327	Dasypus novemcinctus	45.66	3.00e-79	287.00
IUUC-Dor-030186	Dipodomys ordii	54.73	7.00e-47	180.00
IUUC-Dse-031475	Dothistroma septosporum	48.18	4.00e-87	313.00
IUUC-Dme-031826	Drosophila melanogaster	42.16	2.00e-70	258.00
IUUC-Ete-032252	Echinops telfairi	37.68	7.00e-48	183.00
IUUC-Eca-033889	Equus caballus	41.88	1.00e-48	185.00
IUUC-Fca-035989	Felis catus	45.34	1.00e-78	285.00
IUUC-Fal-036637	Ficedula albicollis	46.30	2.00e-80	291.00
IUUC-Fox-038066	Fusarium oxysporum	50.96	2.00e-88	318.00
IUUC-Fso-038288	Fusarium solani	50.00	2.00e-84	304.00
IUUC-Gmo-039477	Gadus morhua	46.62	5.00e-81	293.00
IUUC-Ggr-039990	Gaeumannomyces graminis	51.28	2.00e-89	321.00
IUUC-Gga-040890	Gallus gallus	46.62	4.00e-81	293.00
IUUC-Gac-041502	Gasterosteus aculeatus	46.30	2.00e-80	291.00
IUUC-Gma-042985	Glycine max	87.06	3.00e-165	573.00
IUUC-Ggo-045629	Gorilla gorilla	45.37	7.00e-78	283.00
IUUC-Hsa-045824	Homo sapiens	44.40	2.00e-68	252.00
IUUC-Hvu-047767	Hordeum vulgare	84.14	6.00e-160	555.00
IUUC-Itr-047932	Ictidomys tridecemlineatus	45.66	3.00e-79	287.00
IUUC-Kpa-049173	Komagataella pastoris	54.64	3.00e-99	353.00
IUUC-Lch-049703	Latimeria chalumnae	46.30	3.00e-80	291.00
IUUC-Lpe-050744	Leersia perrieri	75.73	9.00e-139	485.00
IUUC-Loc-052507	Lepisosteus oculatus	45.66	2.00e-79	288.00
IUUC-Lma-053084	Leptosphaeria maculans	49.85	2.00e-86	311.00
IUUC-Laf-053595	Loxodonta africana	45.66	4.00e-79	287.00
IUUC-Mcc-055634	Macaca mulatta	38.74	1.00e-69	256.00
IUUC-Meu-055925	Macropus eugenii	45.49	6.00e-70	256.00
IUUC-Mor-057131	Magnaporthe oryzae	51.28	5.00e-91	326.00
IUUC-Mpo-057524	Magnaporthe poae	50.32	6.00e-88	316.00
IUUC-Mtr-057980	Medicago truncatula	85.76	7.00e-163	565.00
IUUC-Mla-059082	Melampsora laricipopulina	42.73	5.00e-74	270.00
IUUC-Mga-059552	Meleagris gallopavo	43.21	2.00e-61	228.00
IUUC-Mvi-060504	Microbotryum violaceum	49.01	2.00e-81	295.00
IUUC-Mdo-062886	Monodelphis domestica	46.30	2.00e-80	291.00
IUUC-Mmu-063477	Mus musculus	45.66	1.00e-79	289.00
IUUC-Mac-065439	Musa acuminata	84.79	1.00e-160	557.00
IUUC-Mpu-066708	Mustela putorius furo	45.34	4.00e-78	284.00
IUUC-Mlu-067311	Myotis lucifugus	44.10	4.00e-76	277.00
IUUC-Nfi-068294	Neosartorya fischeri	50.63	2.00e-63	235.00
IUUC-Ncr-068811	Neurospora crassa	50.80	2.00e-86	311.00
IUUC-Nle-069632	Nomascus leucogenys	45.66	3.00e-79	287.00
IUUC-Opr-071128	Ochotona princeps	49.44	3.00e-48	183.00
IUUC-Ont-071494	Oreochromis niloticus	45.66	1.00e-79	288.00
IUUC-Oan-073298	Ornithorhynchus anatinus	38.71	7.00e-35	139.00
IUUC-Ocu-073983	Oryctolagus cuniculus	45.34	4.00e-78	283.00
IUUC-Oba-076001	Oryza barthii	74.76	1.00e-137	481.00
IUUC-Obr-076833	Oryza brachyantha	80.58	1.00e-153	535.00
IUUC-Ogl-077680	Oryza glaberrima	80.26	3.00e-153	533.00
IUUC-Ogu-078086	Oryza glumaepatula	74.43	2.00e-136	478.00
IUUC-Oin-079336	Oryza indica	80.26	3.00e-153	533.00
IUUC-Olo-080368	Oryza longistaminata	74.73	6.00e-119	419.00
IUUC-Oni-083046	Oryza nivara	74.76	1.00e-137	481.00
IUUC-Opu-084173	Oryza punctata	74.76	1.00e-137	481.00
IUUC-Oru-084599	Oryza rufipogon	74.76	1.00e-137	481.00
IUUC-Osa-086193	Oryza sativa	80.26	3.00e-153	533.00
IUUC-Ola-087216	Oryzias latipes	45.98	9.00e-80	289.00
IUUC-Olu-087852	Ostreococcus lucimarinus	70.82	3.00e-134	470.00
IUUC-Oga-088840	Otolemur garnettii	45.37	8.00e-78	283.00
IUUC-Oar-089294	Ovis aries	44.96	1.00e-67	248.00
IUUC-Ptr-090565	Pan troglodytes	45.66	3.00e-79	287.00
IUUC-Pan-092175	Papio anubis	45.66	3.00e-79	287.00
IUUC-Psi-093180	Pelodiscus sinensis	43.45	3.00e-62	230.00
IUUC-Pma-094705	Petromyzon marinus	47.27	5.00e-81	293.00
IUUC-Pno-095001	Phaeosphaeria nodorum	46.60	3.00e-77	280.00
IUUC-Ppa-095628	Physcomitrella patens	80.26	2.00e-152	530.00
IUUC-Pfo-097128	Poecilia formosa	46.30	8.00e-80	289.00
IUUC-Pab-098386	Pongo abelii	45.66	3.00e-79	287.00
IUUC-Pop-099064	Populus trichocarpa	85.76	2.00e-162	563.00
IUUC-Pca-100971	Procavia capensis	44.77	2.00e-69	254.00
IUUC-Ppe-101871	Prunus persica	86.64	2.00e-163	567.00
IUUC-Pva-102230	Pteropus vampyrus	53.28	3.00e-36	144.00
IUUC-Pgr-103511	Puccinia graminis	43.41	7.00e-75	273.00
IUUC-Ptt-103882	Puccinia triticina	40.17	4.00e-71	261.00
IUUC-Pte-104402	Pyrenophora teres	50.15	1.00e-86	312.00
IUUC-Pyt-104448	Pyrenophora triticirepentis	49.85	2.00e-86	311.00
IUUC-Rno-104880	Rattus norvegicus	45.34	7.00e-79	286.00
IUUC-Sce-106266	Saccharomyces cerevisiae	52.32	1.00e-93	335.00
IUUC-Sha-106966	Sarcophilus harrisii	46.30	2.00e-80	291.00
IUUC-Sja-107797	Schizosaccharomyces japonicus	56.07	7.00e-106	375.00
IUUC-Spo-108366	Schizosaccharomyces pombe	55.74	4.00e-105	373.00
IUUC-Smo-108749	Selaginella moellendorffii	76.77	3.00e-145	506.00
IUUC-Sit-110741	Setaria italica	84.47	4.00e-160	556.00
IUUC-Sly-111879	Solanum lycopersicum	85.96	2.00e-118	417.00
IUUC-Sbi-114551	Sorghum bicolor	84.14	1.00e-159	554.00
IUUC-Sre-114962	Sporisorium reilianum	46.88	5.00e-89	320.00
IUUC-Ssc-115363	Sus scrofa	45.05	2.00e-77	281.00
IUUC-Tgu-116695	Taeniopygia guttata	37.54	4.00e-51	194.00
IUUC-Tru-117999	Takifugu rubripes	45.69	8.00e-80	289.00
IUUC-Tni-119973	Tetraodon nigroviridis	45.98	2.00e-80	291.00
IUUC-Tca-121688	Theobroma cacao	86.77	7.00e-165	572.00
IUUC-Tre-122158	Trichoderma reesei	49.52	1.00e-86	312.00
IUUC-Tvi-122511	Trichoderma virens	50.16	1.00e-87	315.00
IUUC-Tae-124124	Triticum aestivum	83.82	8.00e-160	555.00
IUUC-Tur-126228	Triticum urartu	78.32	2.00e-144	503.00
IUUC-Tme-127100	Tuber melanosporum	55.12	1.00e-99	355.00
IUUC-Uma-129358	Ustilago maydis	48.27	1.00e-90	325.00
IUUC-Vda-129756	Verticillium dahliae	50.48	2.00e-88	318.00
IUUC-Vvi-131581	Vitis vinifera	84.47	3.00e-159	553.00
IUUC-Xtr-132363	Xenopus tropicalis	45.98	8.00e-81	293.00
IUUC-Xma-133857	Xiphophorus maculatus	46.30	8.00e-80	289.00
IUUC-Yli-134368	Yarrowia lipolytica	54.97	2.00e-100	358.00
IUUC-Zma-135854	Zea mays	84.14	4.00e-160	556.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence