iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bdi-015046

UUCD1 version

UUC-BrD-01252

Ensembl Protein ID

BRADI3G07926.1

UniProt Accession

I1HYN8; I1HYN8_BRADI

Protein Name

Coatomer subunit beta'

Gene Name

LOC100837884

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI3G07926	BRADI3G07926.1	BRADI3G07926.1
BRADI3G07926	BRADI3G07926.2	BRADI3G07926.2
BRADI3G07926	BRADI3G07926.3	BRADI3G07926.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-32	110.0	186	227
UBD/Beta-Prp	2.20e-65	221.3	17	291

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+cl++    d ++l++GsdD t kvWD+ t  ++++
   Q: 186  GHSKGVNCLDYftgGDrPFLITGSDDQTAKVWDYQTKSCVQT 227
           8********966997789******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           +++++++v+ +p +++++++ ++g++ +w+++t+++++s++  + +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d++++++++
   Q: 17   RSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTDLPVRSAKFIARKQWVVAGADDMHIRVYNYNTMDKVKVFEAHTDYIRCVAVH 111
           5678999**************************************************************************************** PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkel 195
           p++ +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W++ + +   tl g h + v++l+     ++++l
   Q: 112  PTQPFVLSSSDDMLIKLWDWDKGWACTHVFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWSIGSPDPNFTLDG-HSKGVNCLDyfTGGDRPFL 205
           ************************9988**********************************************9.*********7445566*** PP
   S: 196  vsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           ++gs+d+t k+wd+qt++cv+tl+gh  nv+ v f+p+  ++++gs+Dg++r+W +++  l +tl++  ++v++  +++ ++++++
   Q: 206  ITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIIITGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRIVI 291
           *************************************************************************9998655555553 PP

Organism

Brachypodium distachyon

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MMWQPLRLDI KRKLAQRSER VKSVDLHPTE PWILSSLYSG SVCIWNYQTQ TMVKSFEVTD 60
LPVRSAKFIA RKQWVVAGAD DMHIRVYNYN TMDKVKVFEA HTDYIRCVAV HPTQPFVLSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATGTGGC AGCCGCTCCG GTTGGATATC AAGGTAATCT TGATGCCTCG TGCTATAGGA 60
TCAACTCGGT AAATGTTTGG TGTGGCGTCG CTTATGTTGG TCTTGTGTTT GGTTGGATCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000222	Aegilops tauschii	93.87	0.00e+00	1100.00
IUUC-Aml-002154	Ailuropoda melanoleuca	61.09	0.00e+00	1107.00
IUUC-Atr-003090	Amborella trichopoda	78.43	0.00e+00	1446.00
IUUC-Apl-003976	Anas platyrhynchos	61.21	0.00e+00	1112.00
IUUC-Aca-004301	Anolis carolinensis	61.09	0.00e+00	1115.00
IUUC-Aly-006508	Arabidopsis lyrata	78.61	0.00e+00	1486.00
IUUC-Ath-007635	Arabidopsis thaliana	77.77	0.00e+00	1482.00
IUUC-Ago-007914	Ashbya gossypii	45.79	0.00e+00	714.00
IUUC-Acl-008237	Aspergillus clavatus	53.10	0.00e+00	905.00
IUUC-Afl-008535	Aspergillus flavus	51.18	0.00e+00	853.00
IUUC-Afu-008845	Aspergillus fumigatus	51.99	0.00e+00	897.00
IUUC-Ani-009135	Aspergillus nidulans	54.41	0.00e+00	880.00
IUUC-Ang-009654	Aspergillus niger	57.21	0.00e+00	809.00
IUUC-Aor-009939	Aspergillus oryzae	52.08	0.00e+00	914.00
IUUC-Ate-010355	Aspergillus terreus	52.93	0.00e+00	876.00
IUUC-Ame-010922	Astyanax mexicanus	56.37	0.00e+00	956.00
IUUC-Bgr-012249	Blumeria graminis	52.48	0.00e+00	873.00
IUUC-Bta-013579	Bos taurus	61.96	0.00e+00	967.00
IUUC-Bci-013866	Botrytis cinerea	53.26	0.00e+00	881.00
IUUC-Bol-016271	Brassica oleracea	79.22	0.00e+00	1499.00
IUUC-Bra-017758	Brassica rapa	78.45	0.00e+00	1488.00
IUUC-Cel-018387	Caenorhabditis elegans	54.66	0.00e+00	969.00
IUUC-Cja-019145	Callithrix jacchus	60.97	0.00e+00	1106.00
IUUC-Cfa-020564	Canis familiaris	61.09	0.00e+00	1107.00
IUUC-Cpo-022201	Cavia porcellus	61.09	0.00e+00	1108.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	66.10	0.00e+00	1094.00
IUUC-Csa-023383	Chlorocebus sabaeus	65.73	0.00e+00	832.00
IUUC-Cho-024454	Choloepus hoffmanni	59.57	0.00e+00	934.00
IUUC-Cin-025681	Ciona intestinalis	58.33	0.00e+00	992.00
IUUC-Csv-026012	Ciona savignyi	59.09	0.00e+00	967.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	48.83	0.00e+00	786.00
IUUC-Cne-026986	Cryptococcus neoformans	48.37	0.00e+00	843.00
IUUC-Cme-027219	Cyanidioschyzon merolae	51.19	0.00e+00	866.00
IUUC-Dre-027846	Danio rerio	61.36	0.00e+00	1104.00
IUUC-Dor-030462	Dipodomys ordii	59.46	0.00e+00	847.00
IUUC-Dse-031268	Dothistroma septosporum	52.32	0.00e+00	871.00
IUUC-Dme-031791	Drosophila melanogaster	57.53	0.00e+00	1006.00
IUUC-Eca-034180	Equus caballus	59.36	0.00e+00	1063.00
IUUC-Eeu-035086	Erinaceus europaeus	48.95	5.00e-122	431.00
IUUC-Fca-036265	Felis catus	61.09	0.00e+00	1107.00
IUUC-Fal-037202	Ficedula albicollis	60.49	0.00e+00	1062.00
IUUC-Fox-037711	Fusarium oxysporum	52.95	0.00e+00	841.00
IUUC-Fso-038268	Fusarium solani	52.29	0.00e+00	849.00
IUUC-Gmo-039046	Gadus morhua	60.57	0.00e+00	1098.00
IUUC-Ggr-039863	Gaeumannomyces graminis	53.19	0.00e+00	864.00
IUUC-Gga-041112	Gallus gallus	61.80	0.00e+00	1119.00
IUUC-Gac-041733	Gasterosteus aculeatus	60.43	0.00e+00	1067.00
IUUC-Gma-044086	Glycine max	80.90	0.00e+00	1543.00
IUUC-Ggo-044984	Gorilla gorilla	60.97	0.00e+00	1105.00
IUUC-Hsa-046698	Homo sapiens	60.85	0.00e+00	1105.00
IUUC-Hvu-047669	Hordeum vulgare	98.60	0.00e+00	748.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	61.09	0.00e+00	1107.00
IUUC-Kpa-049265	Komagataella pastoris	50.56	0.00e+00	844.00
IUUC-Lch-050473	Latimeria chalumnae	61.14	0.00e+00	1108.00
IUUC-Lpe-051579	Leersia perrieri	88.58	0.00e+00	1621.00
IUUC-Loc-052675	Lepisosteus oculatus	61.86	0.00e+00	1106.00
IUUC-Lma-053218	Leptosphaeria maculans	52.44	0.00e+00	870.00
IUUC-Laf-053757	Loxodonta africana	61.07	0.00e+00	1103.00
IUUC-Mcc-054859	Macaca mulatta	60.97	0.00e+00	1106.00
IUUC-Meu-056174	Macropus eugenii	52.00	3.00e-106	379.00
IUUC-Mor-057264	Magnaporthe oryzae	53.13	0.00e+00	850.00
IUUC-Mpo-057538	Magnaporthe poae	52.95	0.00e+00	868.00
IUUC-Mtr-058618	Medicago truncatula	81.16	0.00e+00	1505.00
IUUC-Mla-058937	Melampsora laricipopulina	51.93	0.00e+00	887.00
IUUC-Mga-059875	Meleagris gallopavo	61.54	0.00e+00	1113.00
IUUC-Mvi-060240	Microbotryum violaceum	50.12	0.00e+00	867.00
IUUC-Mmr-061261	Microcebus murinus	61.09	0.00e+00	1108.00
IUUC-Mdo-062076	Monodelphis domestica	61.33	0.00e+00	1113.00
IUUC-Mmu-063324	Mus musculus	61.09	0.00e+00	1108.00
IUUC-Mac-064636	Musa acuminata	81.84	0.00e+00	1537.00
IUUC-Mpu-065961	Mustela putorius furo	61.09	0.00e+00	1107.00
IUUC-Mlu-067059	Myotis lucifugus	60.85	0.00e+00	1086.00
IUUC-Nfi-068277	Neosartorya fischeri	51.88	0.00e+00	889.00
IUUC-Ncr-068659	Neurospora crassa	52.88	0.00e+00	882.00
IUUC-Nle-069034	Nomascus leucogenys	60.97	0.00e+00	1105.00
IUUC-Opr-070334	Ochotona princeps	63.09	0.00e+00	1005.00
IUUC-Ont-071563	Oreochromis niloticus	60.91	0.00e+00	1102.00
IUUC-Oan-073416	Ornithorhynchus anatinus	60.37	0.00e+00	1049.00
IUUC-Ocu-074522	Oryctolagus cuniculus	61.09	0.00e+00	1104.00
IUUC-Oba-075751	Oryza barthii	85.14	0.00e+00	1568.00
IUUC-Obr-076163	Oryza brachyantha	89.55	0.00e+00	1655.00
IUUC-Oin-079856	Oryza indica	89.24	0.00e+00	1636.00
IUUC-Ome-081554	Oryza meridionalis	85.51	0.00e+00	1540.00
IUUC-Opu-083400	Oryza punctata	87.29	0.00e+00	1636.00
IUUC-Oru-085196	Oryza rufipogon	87.08	0.00e+00	1588.00
IUUC-Ola-087245	Oryzias latipes	62.30	0.00e+00	1100.00
IUUC-Olu-087655	Ostreococcus lucimarinus	65.59	0.00e+00	1118.00
IUUC-Oga-088163	Otolemur garnettii	58.77	0.00e+00	1053.00
IUUC-Oar-089842	Ovis aries	60.85	0.00e+00	1108.00
IUUC-Ptr-090501	Pan troglodytes	60.97	0.00e+00	1106.00
IUUC-Pan-092011	Papio anubis	60.97	0.00e+00	1106.00
IUUC-Psi-093308	Pelodiscus sinensis	61.33	0.00e+00	1113.00
IUUC-Pma-094695	Petromyzon marinus	54.66	0.00e+00	967.00
IUUC-Ppa-095911	Physcomitrella patens	73.29	0.00e+00	1354.00
IUUC-Pfo-096587	Poecilia formosa	62.42	0.00e+00	1102.00
IUUC-Pab-097926	Pongo abelii	60.29	0.00e+00	1036.00
IUUC-Pop-099634	Populus trichocarpa	84.80	0.00e+00	1498.00
IUUC-Pca-100965	Procavia capensis	60.14	0.00e+00	1070.00
IUUC-Ppe-101470	Prunus persica	81.58	0.00e+00	1535.00
IUUC-Pva-102451	Pteropus vampyrus	58.11	0.00e+00	838.00
IUUC-Pgr-103453	Puccinia graminis	52.81	0.00e+00	890.00
IUUC-Ptt-103868	Puccinia triticina	52.93	0.00e+00	890.00
IUUC-Pte-104274	Pyrenophora teres	53.04	0.00e+00	891.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	51.28	0.00e+00	839.00
IUUC-Rno-105979	Rattus norvegicus	53.12	0.00e+00	805.00
IUUC-Sce-106269	Saccharomyces cerevisiae	45.52	0.00e+00	742.00
IUUC-Sha-106905	Sarcophilus harrisii	61.33	0.00e+00	1112.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	45.76	0.00e+00	763.00
IUUC-Spo-108299	Schizosaccharomyces pombe	46.20	0.00e+00	785.00
IUUC-Smo-108695	Selaginella moellendorffii	78.31	0.00e+00	1344.00
IUUC-Sit-110692	Setaria italica	90.36	0.00e+00	1625.00
IUUC-Sly-111775	Solanum lycopersicum	79.98	0.00e+00	1508.00
IUUC-Sbi-113801	Sorghum bicolor	88.72	0.00e+00	1630.00
IUUC-Sre-115040	Sporisorium reilianum	51.26	0.00e+00	876.00
IUUC-Ssc-115593	Sus scrofa	60.97	0.00e+00	1106.00
IUUC-Tgu-117239	Taeniopygia guttata	61.49	0.00e+00	1117.00
IUUC-Tru-118025	Takifugu rubripes	60.48	0.00e+00	1096.00
IUUC-Tsy-118824	Tarsius syrichta	58.51	0.00e+00	787.00
IUUC-Tni-120142	Tetraodon nigroviridis	60.60	0.00e+00	1095.00
IUUC-Tca-121613	Theobroma cacao	82.70	0.00e+00	1558.00
IUUC-Tre-122072	Trichoderma reesei	52.63	0.00e+00	870.00
IUUC-Tvi-122546	Trichoderma virens	51.71	0.00e+00	856.00
IUUC-Tae-125385	Triticum aestivum	95.66	0.00e+00	1765.00
IUUC-Tme-127041	Tuber melanosporum	53.13	0.00e+00	900.00
IUUC-Tbe-127770	Tupaia belangeri	60.90	0.00e+00	885.00
IUUC-Ttr-129294	Tursiops truncatus	60.85	0.00e+00	1104.00
IUUC-Uma-129351	Ustilago maydis	50.18	0.00e+00	868.00
IUUC-Vda-129716	Verticillium dahliae	53.51	0.00e+00	898.00
IUUC-Vvi-131689	Vitis vinifera	85.70	0.00e+00	1512.00
IUUC-Xtr-132633	Xenopus tropicalis	62.42	0.00e+00	1110.00
IUUC-Xma-133347	Xiphophorus maculatus	62.67	0.00e+00	1104.00
IUUC-Yli-134455	Yarrowia lipolytica	50.00	0.00e+00	804.00
IUUC-Zma-135706	Zea mays	89.25	0.00e+00	1659.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence