iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mla-059107

Ensembl Protein ID

EGG05904

UniProt Accession

F4RP63; F4RP63_MELLP

Genbank Protein ID

EGG05904.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

GL883111

Gene Name

YTM1; MELLADRAFT_74936

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MELLADRAFT_74936	EGG05904	EGG05904

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.40e-25	85.4	377	413

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtl...lvsGsdDgtikvWDlrt 32
           gH+++v++++   s+t+   ++sGs Dgt+k+WD+r+
   Q: 377  GHQAPVSSISSnpSNTHslqILSGSFDGTCKIWDTRS 413
           8********888633556679*************987 PP

Organism

Melampsora laricipopulina

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MIPVRLVTKS KQYAIPNAKY MVPSDWKRFQ LSELINKVLE HSQPIPFDFV IEDQLLRTSV 60
KTFIDSRGLS TESILEIEYL ESVLPPKYVN SFQHDDWISH LDVSRTGTFL TACYDANLRL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAACCAAGCT TCAACTTCAG CTTCAAACGA TGTTGTCCAA ACCAATGATA CCTCATCAGC 60
TCCAACGATG ATCCCAGTCC GATTAGTCAC TAAATCAAAA CAATATGCAA TTCCGAATGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

mlr:MELLADRAFT_74936

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	26.50	5.00e-40	156.00
IUUC-Aml-001997	Ailuropoda melanoleuca	27.81	2.00e-30	124.00
IUUC-Atr-002544	Amborella trichopoda	26.39	9.00e-35	139.00
IUUC-Apl-003981	Anas platyrhynchos	28.22	1.00e-31	128.00
IUUC-Aca-004370	Anolis carolinensis	26.46	2.00e-37	147.00
IUUC-Aly-006455	Arabidopsis lyrata	27.33	5.00e-38	149.00
IUUC-Ath-006669	Arabidopsis thaliana	28.18	2.00e-34	137.00
IUUC-Ago-007864	Ashbya gossypii	29.98	1.00e-49	188.00
IUUC-Acl-008177	Aspergillus clavatus	29.90	9.00e-47	179.00
IUUC-Afl-008617	Aspergillus flavus	28.63	2.00e-43	168.00
IUUC-Afu-008752	Aspergillus fumigatus	28.29	1.00e-42	165.00
IUUC-Ani-009136	Aspergillus nidulans	29.09	4.00e-45	173.00
IUUC-Ang-009701	Aspergillus niger	28.17	1.00e-40	158.00
IUUC-Aor-009884	Aspergillus oryzae	28.43	5.00e-43	166.00
IUUC-Ate-010472	Aspergillus terreus	23.08	2.00e-12	64.70
IUUC-Ame-011432	Astyanax mexicanus	25.92	4.00e-37	146.00
IUUC-Bgr-012218	Blumeria graminis	28.54	1.00e-43	168.00
IUUC-Bta-012829	Bos taurus	28.08	1.00e-33	135.00
IUUC-Bci-013953	Botrytis cinerea	26.35	3.00e-41	160.00
IUUC-Bdi-014351	Brachypodium distachyon	26.01	2.00e-38	150.00
IUUC-Bol-015618	Brassica oleracea	27.69	4.00e-36	143.00
IUUC-Bra-017876	Brassica rapa	27.21	2.00e-39	154.00
IUUC-Cel-018569	Caenorhabditis elegans	23.18	1.00e-17	82.00
IUUC-Cja-019468	Callithrix jacchus	27.65	3.00e-30	124.00
IUUC-Cfa-020471	Canis familiaris	27.00	3.00e-30	124.00
IUUC-Cpo-022260	Cavia porcellus	27.43	4.00e-31	126.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	28.24	3.00e-37	147.00
IUUC-Csa-023989	Chlorocebus sabaeus	27.86	7.00e-31	125.00
IUUC-Cho-024426	Choloepus hoffmanni	27.05	2.00e-19	87.80
IUUC-Cin-025789	Ciona intestinalis	26.45	6.00e-37	146.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	34.15	2.00e-09	53.90
IUUC-Cne-027063	Cryptococcus neoformans	31.31	3.00e-52	197.00
IUUC-Dre-027907	Danio rerio	26.78	5.00e-39	152.00
IUUC-Dno-029225	Dasypus novemcinctus	27.65	6.00e-32	129.00
IUUC-Dor-031082	Dipodomys ordii	25.81	2.00e-13	68.20
IUUC-Dse-031308	Dothistroma septosporum	29.02	6.00e-51	192.00
IUUC-Dme-032189	Drosophila melanogaster	26.65	2.00e-31	127.00
IUUC-Ete-032247	Echinops telfairi	27.21	8.00e-28	115.00
IUUC-Eca-034285	Equus caballus	27.43	1.00e-32	132.00
IUUC-Eeu-035322	Erinaceus europaeus	24.56	6.00e-25	106.00
IUUC-Fca-036114	Felis catus	27.43	5.00e-32	129.00
IUUC-Fal-036891	Ficedula albicollis	26.40	1.00e-26	111.00
IUUC-Fox-037965	Fusarium oxysporum	30.92	6.00e-47	179.00
IUUC-Fso-038244	Fusarium solani	30.68	1.00e-44	171.00
IUUC-Gmo-039040	Gadus morhua	26.67	4.00e-40	156.00
IUUC-Ggr-040093	Gaeumannomyces graminis	26.22	3.00e-35	140.00
IUUC-Gga-040610	Gallus gallus	28.02	3.00e-36	144.00
IUUC-Gac-042117	Gasterosteus aculeatus	27.10	5.00e-40	156.00
IUUC-Gma-043425	Glycine max	29.24	8.00e-42	162.00
IUUC-Ggo-045179	Gorilla gorilla	27.65	2.00e-30	124.00
IUUC-Hsa-046114	Homo sapiens	27.86	9.00e-31	125.00
IUUC-Hvu-047331	Hordeum vulgare	26.54	1.00e-33	135.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	27.21	3.00e-31	127.00
IUUC-Kpa-049304	Komagataella pastoris	29.81	3.00e-48	184.00
IUUC-Lch-050655	Latimeria chalumnae	25.73	6.00e-26	109.00
IUUC-Lpe-051675	Leersia perrieri	26.98	2.00e-40	158.00
IUUC-Loc-052868	Lepisosteus oculatus	26.72	5.00e-38	149.00
IUUC-Lma-053258	Leptosphaeria maculans	27.05	5.00e-38	151.00
IUUC-Laf-053993	Loxodonta africana	28.29	9.00e-33	132.00
IUUC-Meu-056501	Macropus eugenii	26.76	2.00e-24	104.00
IUUC-Mor-057114	Magnaporthe oryzae	28.60	4.00e-45	173.00
IUUC-Mpo-057463	Magnaporthe poae	32.37	4.00e-19	85.90
IUUC-Mtr-058367	Medicago truncatula	27.58	2.00e-31	128.00
IUUC-Mga-059745	Meleagris gallopavo	28.17	5.00e-34	136.00
IUUC-Mvi-060362	Microbotryum violaceum	35.11	5.00e-76	276.00
IUUC-Mdo-062257	Monodelphis domestica	28.45	1.00e-37	148.00
IUUC-Mmu-063546	Mus musculus	26.78	1.00e-31	128.00
IUUC-Mac-065540	Musa acuminata	29.47	2.00e-40	157.00
IUUC-Mpu-066284	Mustela putorius furo	27.43	4.00e-32	130.00
IUUC-Mlu-067241	Myotis lucifugus	27.21	6.00e-32	129.00
IUUC-Nfi-068260	Neosartorya fischeri	28.46	1.00e-42	165.00
IUUC-Ncr-068719	Neurospora crassa	28.96	3.00e-42	164.00
IUUC-Nle-068981	Nomascus leucogenys	27.21	6.00e-29	119.00
IUUC-Opr-071218	Ochotona princeps	25.94	5.00e-29	119.00
IUUC-Ont-071646	Oreochromis niloticus	27.16	5.00e-37	146.00
IUUC-Oan-073453	Ornithorhynchus anatinus	28.29	2.00e-42	164.00
IUUC-Ocu-074008	Oryctolagus cuniculus	27.43	2.00e-32	130.00
IUUC-Oba-075712	Oryza barthii	26.15	5.00e-27	113.00
IUUC-Obr-076721	Oryza brachyantha	26.44	2.00e-38	151.00
IUUC-Ogl-077229	Oryza glaberrima	26.92	3.00e-40	157.00
IUUC-Ogu-078977	Oryza glumaepatula	26.15	1.00e-26	112.00
IUUC-Oin-079683	Oryza indica	26.65	3.00e-40	157.00
IUUC-Olo-080291	Oryza longistaminata	24.85	3.00e-25	106.00
IUUC-Ome-081834	Oryza meridionalis	27.04	3.00e-40	157.00
IUUC-Oni-082507	Oryza nivara	25.85	1.00e-34	138.00
IUUC-Opu-083396	Oryza punctata	27.41	4.00e-41	160.00
IUUC-Oru-085220	Oryza rufipogon	25.85	4.00e-34	136.00
IUUC-Osa-085767	Oryza sativa	26.65	3.00e-40	157.00
IUUC-Ola-087420	Oryzias latipes	26.51	7.00e-40	155.00
IUUC-Olu-087740	Ostreococcus lucimarinus	23.37	4.00e-22	97.10
IUUC-Oga-088264	Otolemur garnettii	27.00	2.00e-30	124.00
IUUC-Oar-089335	Ovis aries	27.86	1.00e-32	131.00
IUUC-Ptr-091320	Pan troglodytes	27.86	9.00e-31	125.00
IUUC-Pan-092833	Papio anubis	27.65	9.00e-31	125.00
IUUC-Psi-093504	Pelodiscus sinensis	28.20	6.00e-32	129.00
IUUC-Pma-094189	Petromyzon marinus	28.45	6.00e-34	136.00
IUUC-Pno-094929	Phaeosphaeria nodorum	27.25	4.00e-40	157.00
IUUC-Ppa-095429	Physcomitrella patens	26.84	2.00e-39	154.00
IUUC-Pfo-096337	Poecilia formosa	26.08	5.00e-39	153.00
IUUC-Pab-097571	Pongo abelii	27.86	9.00e-31	125.00
IUUC-Pop-099977	Populus trichocarpa	27.35	1.00e-33	135.00
IUUC-Pca-100394	Procavia capensis	26.59	3.00e-23	100.00
IUUC-Ppe-101848	Prunus persica	27.52	1.00e-38	151.00
IUUC-Pva-102921	Pteropus vampyrus	26.58	1.00e-12	65.90
IUUC-Pgr-103637	Puccinia graminis	59.79	9.00e-170	587.00
IUUC-Ptt-103781	Puccinia triticina	61.01	7.00e-172	594.00
IUUC-Pte-104135	Pyrenophora teres	28.85	3.00e-38	152.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	27.81	4.00e-38	150.00
IUUC-Rno-105114	Rattus norvegicus	27.65	1.00e-31	128.00
IUUC-Sce-106401	Saccharomyces cerevisiae	30.17	1.00e-49	188.00
IUUC-Sha-107122	Sarcophilus harrisii	27.65	5.00e-34	136.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	29.59	2.00e-48	184.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.00	9.00e-46	175.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.00	6.00e-42	162.00
IUUC-Smo-108720	Selaginella moellendorffii	27.16	5.00e-36	143.00
IUUC-Sit-110311	Setaria italica	27.39	4.00e-37	146.00
IUUC-Sly-111178	Solanum lycopersicum	27.73	1.00e-38	151.00
IUUC-Stu-112778	Solanum tuberosum	28.45	1.00e-37	148.00
IUUC-Sbi-114193	Sorghum bicolor	27.14	9.00e-39	152.00
IUUC-Sre-115002	Sporisorium reilianum	28.07	1.00e-47	182.00
IUUC-Ssc-116066	Sus scrofa	28.08	9.00e-34	135.00
IUUC-Tgu-117048	Taeniopygia guttata	27.29	2.00e-30	124.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.29	6.00e-35	139.00
IUUC-Tca-121605	Theobroma cacao	29.26	3.00e-38	150.00
IUUC-Tre-121947	Trichoderma reesei	29.32	4.00e-43	167.00
IUUC-Tvi-122481	Trichoderma virens	29.08	6.00e-44	169.00
IUUC-Tae-123847	Triticum aestivum	26.50	5.00e-40	156.00
IUUC-Tur-126586	Triticum urartu	25.80	4.00e-36	143.00
IUUC-Tme-126900	Tuber melanosporum	29.11	2.00e-47	181.00
IUUC-Uma-129628	Ustilago maydis	27.34	6.00e-42	163.00
IUUC-Vpa-130260	Vicugna pacos	27.43	9.00e-33	132.00
IUUC-Vvi-131009	Vitis vinifera	30.17	4.00e-44	170.00
IUUC-Xtr-132083	Xenopus tropicalis	28.27	6.00e-37	146.00
IUUC-Xma-133094	Xiphophorus maculatus	26.51	2.00e-39	154.00
IUUC-Yli-134531	Yarrowia lipolytica	26.20	3.00e-33	134.00
IUUC-Zma-135509	Zea mays	27.41	3.00e-43	167.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence