iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Cel-018293

Ensembl Protein ID

B0280.9

UniProt Accession

P42000; UTP18_CAEEL

Genbank Protein ID

CCD61605.1

Protein Name

U3 small nucleolar RNA-associated protein 18 homolog

Genbank Nucleotide ID

FO080148

Gene Name

B0280.9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
WBGene00015104	B0280.9	B0280.9

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-07	31.6	398	423

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 7    tclaf.sd.tllvsGsdDgtikvWDl 30
           +c++f ++ +++++G+dDg ++v+++
   Q: 398  RCVEFsPNgGYMAVGNDDGRLHVFEI 423
           8*****777**************996 PP

Organism

Caenorhabditis elegans

Functional Description
(View)

Involved in nucleolar processing of pre-18S ribosomal RNA.

Protein Sequence
(Fasta)

MSKRPVIESE KPAWHDEDDD NMVVAVPKKV KMTMRVELKR TTDEEHGELD SKEYVGRLQE 60
AFRKRHGGTP KWAKAAAGDE EEGSLLKTAA GYLAKDVNLP KTTIHTTLIK DFNIGHRYTR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAAATGAGC AAACGGCCAG TGATTGAGTC TGAAAAGCCT GCGTGGCACG ATGAGGACGA 60
CGATAATATG GTTGTGGCGG TTCCAAAAAA AGTGAAAATG ACAATGCGAG TTGAACTCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

cel:CELE_B0280.9

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000184	Aegilops tauschii	26.65	1.00e-41	162.00
IUUC-Aml-002252	Ailuropoda melanoleuca	28.53	2.00e-48	185.00
IUUC-Atr-002575	Amborella trichopoda	26.73	2.00e-43	169.00
IUUC-Aly-006512	Arabidopsis lyrata	25.52	3.00e-39	154.00
IUUC-Ath-007244	Arabidopsis thaliana	25.40	1.00e-39	156.00
IUUC-Ago-007895	Ashbya gossypii	23.82	2.00e-21	95.90
IUUC-Acl-008343	Aspergillus clavatus	21.76	2.00e-21	95.90
IUUC-Afl-008445	Aspergillus flavus	22.57	8.00e-25	107.00
IUUC-Aor-009986	Aspergillus oryzae	22.78	2.00e-24	106.00
IUUC-Ame-011338	Astyanax mexicanus	27.68	2.00e-50	192.00
IUUC-Bgr-012201	Blumeria graminis	20.59	5.00e-18	84.70
IUUC-Bta-013058	Bos taurus	29.77	2.00e-50	191.00
IUUC-Bci-013619	Botrytis cinerea	22.20	9.00e-20	90.50
IUUC-Bdi-014771	Brachypodium distachyon	26.73	6.00e-41	160.00
IUUC-Bol-015617	Brassica oleracea	27.53	3.00e-39	154.00
IUUC-Bra-017561	Brassica rapa	26.18	5.00e-38	150.00
IUUC-Cja-019503	Callithrix jacchus	28.27	2.00e-49	188.00
IUUC-Cfa-020743	Canis familiaris	28.15	2.00e-47	182.00
IUUC-Cpo-021488	Cavia porcellus	29.44	2.00e-48	185.00
IUUC-Cre-022926	Chlamydomonas reinhardtii	23.96	7.00e-26	110.00
IUUC-Csa-023110	Chlorocebus sabaeus	28.01	5.00e-49	187.00
IUUC-Cin-025208	Ciona intestinalis	30.49	2.00e-40	158.00
IUUC-Cme-027351	Cyanidioschyzon merolae	27.09	1.00e-32	133.00
IUUC-Dre-027524	Danio rerio	23.66	6.00e-29	120.00
IUUC-Dno-029243	Dasypus novemcinctus	27.74	6.00e-49	187.00
IUUC-Dor-030110	Dipodomys ordii	28.53	5.00e-45	174.00
IUUC-Dse-031217	Dothistroma septosporum	22.84	2.00e-16	79.70
IUUC-Dme-031999	Drosophila melanogaster	27.75	3.00e-40	158.00
IUUC-Eca-034350	Equus caballus	28.50	2.00e-50	192.00
IUUC-Eeu-034991	Erinaceus europaeus	30.77	1.00e-44	172.00
IUUC-Fal-036614	Ficedula albicollis	24.93	5.00e-41	160.00
IUUC-Gmo-039183	Gadus morhua	30.36	2.00e-47	182.00
IUUC-Gga-040922	Gallus gallus	25.29	4.00e-48	184.00
IUUC-Gac-041475	Gasterosteus aculeatus	28.02	3.00e-41	161.00
IUUC-Gma-043598	Glycine max	26.82	2.00e-45	176.00
IUUC-Ggo-044517	Gorilla gorilla	28.27	4.00e-50	191.00
IUUC-Hsa-045741	Homo sapiens	28.27	6.00e-50	190.00
IUUC-Hvu-047463	Hordeum vulgare	34.51	3.00e-21	93.20
IUUC-Itr-048128	Ictidomys tridecemlineatus	29.40	6.00e-51	193.00
IUUC-Kpa-049335	Komagataella pastoris	25.76	8.00e-34	137.00
IUUC-Lch-049816	Latimeria chalumnae	27.88	3.00e-49	188.00
IUUC-Lpe-051140	Leersia perrieri	26.41	1.00e-38	153.00
IUUC-Loc-051942	Lepisosteus oculatus	27.30	9.00e-48	183.00
IUUC-Laf-054245	Loxodonta africana	29.06	1.00e-49	189.00
IUUC-Meu-056300	Macropus eugenii	26.53	1.00e-36	145.00
IUUC-Mor-057184	Magnaporthe oryzae	24.75	1.00e-19	90.10
IUUC-Mtr-057652	Medicago truncatula	27.38	2.00e-44	172.00
IUUC-Mga-060179	Meleagris gallopavo	25.79	5.00e-46	177.00
IUUC-Mvi-060435	Microbotryum violaceum	23.53	2.00e-26	112.00
IUUC-Mdo-062187	Monodelphis domestica	27.85	4.00e-48	184.00
IUUC-Mmu-063386	Mus musculus	28.72	5.00e-51	194.00
IUUC-Mpu-066084	Mustela putorius furo	29.06	7.00e-49	187.00
IUUC-Mlu-068130	Myotis lucifugus	29.52	9.00e-51	193.00
IUUC-Nle-069743	Nomascus leucogenys	28.03	2.00e-43	169.00
IUUC-Opr-071111	Ochotona princeps	29.28	1.00e-48	186.00
IUUC-Ont-071979	Oreochromis niloticus	28.46	6.00e-50	190.00
IUUC-Ocu-073754	Oryctolagus cuniculus	30.00	1.00e-52	199.00
IUUC-Oba-075007	Oryza barthii	27.29	4.00e-40	158.00
IUUC-Obr-076447	Oryza brachyantha	27.52	1.00e-39	156.00
IUUC-Ogl-077733	Oryza glaberrima	27.29	4.00e-40	157.00
IUUC-Ogu-078828	Oryza glumaepatula	27.29	4.00e-40	158.00
IUUC-Oin-080152	Oryza indica	27.29	4.00e-40	157.00
IUUC-Olo-080983	Oryza longistaminata	27.52	8.00e-40	157.00
IUUC-Oni-082443	Oryza nivara	27.29	5.00e-40	157.00
IUUC-Opu-083771	Oryza punctata	26.14	2.00e-39	155.00
IUUC-Oru-084272	Oryza rufipogon	27.29	5.00e-40	157.00
IUUC-Osa-085885	Oryza sativa	27.38	5.00e-40	157.00
IUUC-Olu-087644	Ostreococcus lucimarinus	20.99	8.00e-10	57.00
IUUC-Oga-088834	Otolemur garnettii	29.17	6.00e-50	190.00
IUUC-Oar-089712	Ovis aries	28.75	2.00e-49	189.00
IUUC-Pan-092561	Papio anubis	28.27	2.00e-49	189.00
IUUC-Ppa-095397	Physcomitrella patens	25.28	5.00e-31	127.00
IUUC-Pfo-097068	Poecilia formosa	30.40	7.00e-53	200.00
IUUC-Pop-099471	Populus trichocarpa	25.99	7.00e-37	147.00
IUUC-Ppe-101446	Prunus persica	25.92	3.00e-41	161.00
IUUC-Pva-102851	Pteropus vampyrus	26.79	4.00e-45	174.00
IUUC-Pgr-103370	Puccinia graminis	22.31	1.00e-23	103.00
IUUC-Ptt-103838	Puccinia triticina	22.25	7.00e-18	84.00
IUUC-Rno-104910	Rattus norvegicus	26.72	4.00e-48	184.00
IUUC-Sce-106258	Saccharomyces cerevisiae	22.45	2.00e-25	109.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	23.96	1.00e-30	126.00
IUUC-Spo-108268	Schizosaccharomyces pombe	23.04	2.00e-31	129.00
IUUC-Smo-108815	Selaginella moellendorffii	27.79	3.00e-43	168.00
IUUC-Sit-109706	Setaria italica	27.00	1.00e-42	166.00
IUUC-Sly-111533	Solanum lycopersicum	27.95	8.00e-42	163.00
IUUC-Stu-112853	Solanum tuberosum	27.59	3.00e-41	161.00
IUUC-Sbi-114747	Sorghum bicolor	27.88	3.00e-43	168.00
IUUC-Ssc-115916	Sus scrofa	28.64	8.00e-51	193.00
IUUC-Tgu-117291	Taeniopygia guttata	24.15	6.00e-40	157.00
IUUC-Tru-118724	Takifugu rubripes	28.75	4.00e-50	191.00
IUUC-Tsy-118928	Tarsius syrichta	32.72	1.00e-37	149.00
IUUC-Tca-121229	Theobroma cacao	25.68	4.00e-45	174.00
IUUC-Tae-125218	Triticum aestivum	26.65	1.00e-41	162.00
IUUC-Tur-126082	Triticum urartu	38.40	3.00e-23	101.00
IUUC-Ttr-128904	Tursiops truncatus	26.34	7.00e-40	157.00
IUUC-Uma-129361	Ustilago maydis	32.89	6.00e-04	39.30
IUUC-Vpa-130817	Vicugna pacos	29.49	6.00e-53	200.00
IUUC-Vvi-131395	Vitis vinifera	26.58	6.00e-42	164.00
IUUC-Xtr-132971	Xenopus tropicalis	30.11	1.00e-54	206.00
IUUC-Xma-133391	Xiphophorus maculatus	30.10	2.00e-51	195.00
IUUC-Yli-134613	Yarrowia lipolytica	24.34	3.00e-29	121.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence