iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007192

UUCD1 version

Ensembl Protein ID

UniProt Accession

Q8S3N1; Q8GYS3; Q9FK06; SINA5_ARATH

Genbank Protein ID

AAM11573.1; BAB09798.1; AED96344.1; ANM69124.1; BAC42088.1; AAO63927.1

Protein Name

E3 ubiquitin-protein ligase SINAT5; RING-type E3 ubiquitin transferase SINAT5; Seven in absentia homolog 5

Genbank Nucleotide ID

AF480944; AB013388; CP002688; CP002688; AK117423; BT005507

Gene Name

SINAT5; At5g53360; K19E1.16

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G27880	AT4G27880.1	AT4G27880.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	12226665; 20599732

Organism

Arabidopsis thaliana

Functional Description
(View)

Homodimer; homodimerization is essential for its function. Interacts with UBC9A and NAC021/NAC022.

Protein Sequence
(Fasta)

METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE 60
LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR QELGDIRCLA LEKVAESLEL 120

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Nucleotide Sequence
(Fasta)

GAACGGTTCA GATTTGATCT TTCTTCTTTT CTCTCTCTCT CTCTCTCTCT CTCTCTCAGT 60
TTCAGAGATC AAAAGAGACC AACGAAGAAA AAAGCACCGC TTTTGCAGAA TCGGTGACGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018121--7-in-absentia-prot_TRAF-dom
IPR004162--SINA-like
IPR008974--TRAF-like
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR013010--Znf_SIAH

PROSITE

PS50089--ZF_RING_2
PS51081--ZF_SIAH

Pfam

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0007275--P:multicellular organism development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006522	Arabidopsis lyrata	99.69	0.00e+00	665.00
IUUC-Bdi-014729	Brachypodium distachyon	87.27	1.00e-149	521.00
IUUC-Bol-015983	Brassica oleracea	89.88	1.00e-172	598.00
IUUC-Bra-016910	Brassica rapa	90.18	8.00e-175	605.00
IUUC-Cel-018320	Caenorhabditis elegans	33.72	2.00e-36	145.00
IUUC-Cho-024933	Choloepus hoffmanni	35.74	1.00e-36	145.00
IUUC-Cin-025674	Ciona intestinalis	34.88	6.00e-39	153.00
IUUC-Csv-026233	Ciona savignyi	34.54	6.00e-39	153.00
IUUC-Dor-030489	Dipodomys ordii	31.49	3.00e-19	87.00
IUUC-Gmo-039091	Gadus morhua	35.29	7.00e-36	143.00
IUUC-Meu-055922	Macropus eugenii	35.74	4.00e-36	144.00
IUUC-Mtr-058699	Medicago truncatula	80.37	4.00e-156	543.00
IUUC-Mdo-061971	Monodelphis domestica	36.14	5.00e-37	147.00
IUUC-Mpu-066331	Mustela putorius furo	37.30	1.00e-41	162.00
IUUC-Opr-070341	Ochotona princeps	26.58	2.00e-12	65.50
IUUC-Oan-073701	Ornithorhynchus anatinus	24.83	2.00e-11	62.40
IUUC-Oba-075289	Oryza barthii	88.28	2.00e-138	484.00
IUUC-Oga-088114	Otolemur garnettii	36.43	3.00e-42	164.00
IUUC-Pop-100033	Populus trichocarpa	80.42	5.00e-156	542.00
IUUC-Pca-100328	Procavia capensis	35.34	2.00e-34	138.00
IUUC-Ppe-101960	Prunus persica	80.18	9.00e-158	548.00
IUUC-Pva-103132	Pteropus vampyrus	24.54	4.00e-11	60.80
IUUC-Sit-110245	Setaria italica	83.20	1.00e-131	462.00
IUUC-Ssc-116441	Sus scrofa	35.74	1.00e-36	146.00
IUUC-Tsy-119548	Tarsius syrichta	31.96	2.00e-08	51.60
IUUC-Tca-121517	Theobroma cacao	81.36	1.00e-159	554.00
IUUC-Vpa-130799	Vicugna pacos	32.16	2.00e-18	84.70

Created Date

25-Jun-2017