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Tag Content
UUCD2 ID IUUC-Pop-099858
UUCD1 version UUC-PoT-00682
Ensembl Protein ID POPTR_0019s07170.1
UniProt Accession B9IPG9; B9IPG9_POPTR
Genbank Protein ID EEE99755.2
Protein Name Uncharacterized protein
Genbank Nucleotide ID CM000355
Gene Name POPTRDRAFT_573797; POPTR_0019s07170g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0019s07170 POPTR_0019s07170.1 POPTR_0019s07170.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.70e-54 180.4 127 160
UBD/Beta-Prp 5.70e-98 328.9 387 643
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDl 30
    gH+d vt l f ++ tll sGs D t++vWDl
   Q: 127 GHKDVVTTLMFhpdTNkTLLFSGSADATVRVWDL 160
    8***********7655899**************8 PP
   


   UBD/Beta-Prp

   S: 19   spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdls..........tgkcvhtlkghedsvl 98
    s +++ll+tgs+d+++++w+ ++ +++ gh ++v av fs++ k ++v+gs+Drtikvw+++ + k ++ +h++++
   Q: 387 SSGRPLLVTGSKDNSVRLWNSESINCIGVGMGHMGGVGAVAFSKKWKnFFVSGSSDRTIKVWSIDgisddadqpiNLKAKAVVAAHDKDIN 477
    47899**************************************99877**************8888888888888999999999******* PP
   S: 99 slsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfd 189
    sl++ p++ + sGs+drt+ vw l+ + +l+gh++ +++v+++p +++++++s D+t+++W +++g++l+t++g ht+sv sf
   Q: 478 SLAIAPNDTLVCSGSQDRTACVWRLPDLVSVV-VLKGHKRGIWSVEFSPVDQCVITASGDKTIKMWAIANGSCLKTFEG-HTSSVLRASFL 566
    ********************************.*********************************************9.*********** PP
   S: 190 sngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlhns 265
    g+++vs++ dg vklw ++t+ec+ t+ h+d v+ ++ +++e +++g+ D ++++W d++ +d ++ ++++
   Q: 567 TRGTQFVSCGADGLVKLWTVKTNECIATYDQHEDKVWALAIGRKTEMFATGGGDAVVNLWyDSTASDKAEAFRKEEE 643
    **********************************************************************9999883 PP
   

Organism Populus trichocarpa
Protein Sequence
(Fasta)
MDRVTRQFYS GGPFAVSSDG SFIACSNGDA IKIVDSPNAS IKASIEVDTD AGVTALALSP 60
DDKFLFSAGH SRLIRVWDLS TFKCGHDGPV MAMACHASGG LLATAGADRK VLVWDVDGGF 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Pop-099858|E3,WD_repeat;UBD,Beta-Prp|Populus trichocarpa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGATCGTG TCACTCGGGT AGGTTTTTTT TTGTCATTTG ATTTAATATT TTTTTAATTT 60
TATCTTTCAA CATTAAGTTA ATTAAAAATT TACCTTTATA ATGGATTGCT AATTTAACAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Pop-099858|E3,WD_repeat;UBD,Beta-Prp|Populus trichocarpa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG pop:POPTR_0019s07170g
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Apl-003519 Anas platyrhynchos 32.47 4.00e-101 362.00
IUUC-Ago-007746 Ashbya gossypii 31.14 1.00e-104 374.00
IUUC-Cre-022986 Chlamydomonas reinhardtii 64.96 5.00e-54 202.00
IUUC-Dno-029914 Dasypus novemcinctus 34.35 3.00e-93 335.00
IUUC-Dor-030685 Dipodomys ordii 39.76 1.00e-94 340.00
IUUC-Dme-031995 Drosophila melanogaster 30.46 4.00e-96 345.00
IUUC-Fox-037863 Fusarium oxysporum 28.67 1.00e-96 347.00
IUUC-Ggr-039820 Gaeumannomyces graminis 28.07 2.00e-92 333.00
IUUC-Kpa-049209 Komagataella pastoris 32.01 2.00e-108 386.00
IUUC-Lch-050085 Latimeria chalumnae 36.58 6.00e-138 484.00
IUUC-Meu-056820 Macropus eugenii 34.35 6.00e-107 381.00
IUUC-Mor-057234 Magnaporthe oryzae 28.60 4.00e-91 328.00
IUUC-Mpo-057456 Magnaporthe poae 29.04 2.00e-68 253.00
IUUC-Opr-071183 Ochotona princeps 37.66 1.00e-145 509.00
IUUC-Oan-073491 Ornithorhynchus anatinus 36.51 3.00e-125 442.00
IUUC-Oar-090032 Ovis aries 37.01 2.00e-106 379.00
IUUC-Pma-094165 Petromyzon marinus 35.99 2.00e-108 386.00
IUUC-Pgr-103288 Puccinia graminis 28.11 1.00e-77 284.00
IUUC-Sar-113586 Sorex araneus 34.25 3.00e-15 76.30
IUUC-Ssc-116342 Sus scrofa 28.96 1.00e-63 237.00
Created Date 25-Jun-2017

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