iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lpe-051675

Ensembl Protein ID

LPERR07G18410.1

UniProt Accession

A0A0D9X166; A0A0D9X166_9ORYZ

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LPERR07G18410	LPERR07G18410.1	LPERR07G18410.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-35	119.8	273	308
UBD/Beta-Prp	5.80e-42	144.7	265	427

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++a+++  ++ s+s+D++++ WD+ tg+ 
   Q: 273  GHTQCVSAVAWPErQTIYSASWDHSVRQWDVQTGKE 308
           8**********88899****************9986 PP

UBD/Beta-Prp

   S: 84   gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtl 175
           g+ ++t+ gh++ v ++++ + ++++ s+s+d  +r wd++tg++    + +  ++ nc+   +++ +l+++G+ D ++r+Wd  k g+l   +
   Q: 265  GSATSTFLGHTQCVSAVAWPE-RQTIYSASWDHSVRQWDVQTGKET--WNMVCGKALNCLDCGGESsSLIAAGGSDPVLRVWDPrKPGTLAPIF 355
           67899**************88.***********************9..6*****************9****************96556776666 PP
   S: 176  ..tgghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsi 246
             ++ h++ +   ++++++ ++lvs s dg+v lwdl+t   + +++ h+d v++v+ + +++ ++sg++D  +
   Q: 356  qfSS-HKSWISACKWHPSSwFHLVSSSFDGKVMLWDLRTAWPLASVESHKDKVLCVDWW-KGDSVISGGADSKL 427
           5477.******************************************************.89999999999765 PP

Organism

Leersia perrieri

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MNSGGASDPS CQVRVRFVTK LPPPLRAPPT SIAVPADLTR MGLSEIVNSL LLAASPGHQA 60
QPFDFLVDGE LVRLPLQEFL LAKGISAERV LELEYVKAVA PRKEEDPRPH DDWVSTVDGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAACTCCG GCGGCGCCTC CGACCCGTCG TGCCAGGTGC GCGTGCGCTT CGTGACGAAG 60
CTCCCGCCGC CGCTGCGGGC GCCGCCCACC TCCATCGCCG TCCCTGCCGA CCTCACCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	84.72	0.00e+00	759.00
IUUC-Aml-001997	Ailuropoda melanoleuca	36.09	3.00e-56	211.00
IUUC-Atr-002544	Amborella trichopoda	62.30	3.00e-160	557.00
IUUC-Apl-003981	Anas platyrhynchos	35.90	4.00e-57	214.00
IUUC-Aca-004370	Anolis carolinensis	34.69	2.00e-65	242.00
IUUC-Aly-006455	Arabidopsis lyrata	62.79	3.00e-167	580.00
IUUC-Ath-006669	Arabidopsis thaliana	62.79	1.00e-163	568.00
IUUC-Ago-007864	Ashbya gossypii	29.98	4.00e-45	175.00
IUUC-Acl-008177	Aspergillus clavatus	29.36	3.00e-40	158.00
IUUC-Afl-008617	Aspergillus flavus	28.54	5.00e-35	141.00
IUUC-Afu-008752	Aspergillus fumigatus	29.37	8.00e-36	144.00
IUUC-Ani-009136	Aspergillus nidulans	29.80	9.00e-38	150.00
IUUC-Ang-009701	Aspergillus niger	28.51	4.00e-35	141.00
IUUC-Aor-009884	Aspergillus oryzae	28.80	2.00e-35	142.00
IUUC-Ame-011432	Astyanax mexicanus	34.37	3.00e-64	238.00
IUUC-Bgr-012218	Blumeria graminis	28.88	1.00e-37	150.00
IUUC-Bta-012829	Bos taurus	34.61	2.00e-56	212.00
IUUC-Bci-013953	Botrytis cinerea	28.78	3.00e-38	152.00
IUUC-Bdi-014351	Brachypodium distachyon	84.53	0.00e+00	730.00
IUUC-Bol-016514	Brassica oleracea	63.13	9.00e-157	545.00
IUUC-Bra-016988	Brassica rapa	63.13	4.00e-157	546.00
IUUC-Cel-018569	Caenorhabditis elegans	25.17	2.00e-26	112.00
IUUC-Cja-019468	Callithrix jacchus	35.32	6.00e-55	207.00
IUUC-Cfa-020471	Canis familiaris	34.45	6.00e-55	207.00
IUUC-Cpo-022260	Cavia porcellus	36.04	3.00e-56	211.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	39.36	3.00e-65	241.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.08	5.00e-55	207.00
IUUC-Cho-024426	Choloepus hoffmanni	34.17	2.00e-41	162.00
IUUC-Cin-025789	Ciona intestinalis	30.90	5.00e-52	197.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	30.34	1.00e-06	45.80
IUUC-Cne-027063	Cryptococcus neoformans	27.48	6.00e-27	114.00
IUUC-Dre-027907	Danio rerio	35.17	2.00e-66	245.00
IUUC-Dno-029225	Dasypus novemcinctus	35.32	2.00e-57	216.00
IUUC-Dor-031082	Dipodomys ordii	33.33	6.00e-25	107.00
IUUC-Dse-031308	Dothistroma septosporum	34.06	5.00e-54	204.00
IUUC-Dme-032189	Drosophila melanogaster	29.52	3.00e-45	175.00
IUUC-Ete-032247	Echinops telfairi	33.41	2.00e-50	192.00
IUUC-Eca-034285	Equus caballus	34.84	5.00e-56	211.00
IUUC-Eeu-035322	Erinaceus europaeus	30.77	2.00e-46	178.00
IUUC-Fca-036114	Felis catus	35.08	2.00e-56	212.00
IUUC-Fal-036891	Ficedula albicollis	35.14	5.00e-51	194.00
IUUC-Fox-037965	Fusarium oxysporum	26.82	5.00e-33	134.00
IUUC-Fso-038244	Fusarium solani	27.14	2.00e-35	142.00
IUUC-Gmo-039040	Gadus morhua	34.69	1.00e-66	246.00
IUUC-Ggr-040093	Gaeumannomyces graminis	24.42	7.00e-27	114.00
IUUC-Gga-040610	Gallus gallus	35.32	1.00e-61	229.00
IUUC-Gac-042117	Gasterosteus aculeatus	34.20	3.00e-64	238.00
IUUC-Gma-043967	Glycine max	64.22	9.00e-167	578.00
IUUC-Ggo-045179	Gorilla gorilla	34.84	2.00e-54	206.00
IUUC-Hsa-046114	Homo sapiens	35.08	7.00e-55	207.00
IUUC-Hvu-047331	Hordeum vulgare	83.67	0.00e+00	671.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.56	2.00e-57	215.00
IUUC-Kpa-049304	Komagataella pastoris	29.51	3.00e-45	175.00
IUUC-Lch-050655	Latimeria chalumnae	31.10	1.00e-40	159.00
IUUC-Loc-052868	Lepisosteus oculatus	34.52	5.00e-65	241.00
IUUC-Lma-053258	Leptosphaeria maculans	29.39	4.00e-43	170.00
IUUC-Laf-053993	Loxodonta africana	35.08	2.00e-57	215.00
IUUC-Mcc-055128	Macaca mulatta	27.99	7.00e-34	137.00
IUUC-Meu-056501	Macropus eugenii	34.90	1.00e-48	186.00
IUUC-Mor-057114	Magnaporthe oryzae	31.29	3.00e-39	155.00
IUUC-Mpo-057463	Magnaporthe poae	33.93	3.00e-18	84.30
IUUC-Mtr-058367	Medicago truncatula	63.44	2.00e-157	548.00
IUUC-Mla-059107	Melampsora laricipopulina	26.34	2.00e-37	149.00
IUUC-Mga-059745	Meleagris gallopavo	36.32	4.00e-60	224.00
IUUC-Mvi-060362	Microbotryum violaceum	24.84	6.00e-30	124.00
IUUC-Mdo-062257	Monodelphis domestica	36.43	4.00e-62	231.00
IUUC-Mmu-063546	Mus musculus	34.29	1.00e-56	213.00
IUUC-Mac-065540	Musa acuminata	72.00	0.00e+00	645.00
IUUC-Mpu-066284	Mustela putorius furo	35.08	4.00e-57	214.00
IUUC-Mlu-067241	Myotis lucifugus	35.56	2.00e-57	216.00
IUUC-Nfi-068260	Neosartorya fischeri	29.40	6.00e-39	154.00
IUUC-Ncr-068719	Neurospora crassa	28.91	4.00e-33	135.00
IUUC-Nle-068981	Nomascus leucogenys	35.32	4.00e-54	204.00
IUUC-Opr-071218	Ochotona princeps	33.25	2.00e-53	202.00
IUUC-Ont-071646	Oreochromis niloticus	33.97	4.00e-59	221.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.75	4.00e-66	244.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.56	7.00e-58	217.00
IUUC-Oba-075712	Oryza barthii	82.24	0.00e+00	686.00
IUUC-Obr-076721	Oryza brachyantha	92.66	0.00e+00	822.00
IUUC-Ogl-077229	Oryza glaberrima	94.94	0.00e+00	840.00
IUUC-Ogu-078977	Oryza glumaepatula	82.71	0.00e+00	689.00
IUUC-Oin-079683	Oryza indica	95.17	0.00e+00	842.00
IUUC-Olo-080291	Oryza longistaminata	72.01	2.00e-143	501.00
IUUC-Ome-081834	Oryza meridionalis	95.75	0.00e+00	828.00
IUUC-Oni-082507	Oryza nivara	92.18	0.00e+00	804.00
IUUC-Opu-083396	Oryza punctata	96.06	0.00e+00	844.00
IUUC-Oru-085220	Oryza rufipogon	92.18	0.00e+00	805.00
IUUC-Osa-085767	Oryza sativa	95.17	0.00e+00	842.00
IUUC-Ola-087420	Oryzias latipes	34.53	5.00e-67	247.00
IUUC-Olu-087740	Ostreococcus lucimarinus	34.78	1.00e-65	243.00
IUUC-Oga-088264	Otolemur garnettii	34.84	2.00e-54	205.00
IUUC-Oar-089335	Ovis aries	34.84	4.00e-57	214.00
IUUC-Ptr-091320	Pan troglodytes	35.08	7.00e-55	207.00
IUUC-Pan-092833	Papio anubis	35.32	4.00e-55	208.00
IUUC-Psi-093504	Pelodiscus sinensis	34.76	2.00e-57	215.00
IUUC-Pma-094189	Petromyzon marinus	34.82	8.00e-61	227.00
IUUC-Pno-094929	Phaeosphaeria nodorum	30.04	3.00e-42	165.00
IUUC-Ppa-095429	Physcomitrella patens	50.91	6.00e-127	446.00
IUUC-Pfo-096337	Poecilia formosa	34.92	4.00e-66	244.00
IUUC-Pab-097571	Pongo abelii	35.08	8.00e-55	206.00
IUUC-Pop-099977	Populus trichocarpa	65.49	2.00e-167	581.00
IUUC-Pca-100394	Procavia capensis	33.58	2.00e-46	179.00
IUUC-Ppe-101848	Prunus persica	61.06	1.00e-164	571.00
IUUC-Pva-102921	Pteropus vampyrus	33.63	2.00e-24	105.00
IUUC-Pgr-103637	Puccinia graminis	26.65	1.00e-35	143.00
IUUC-Ptt-103781	Puccinia triticina	27.59	8.00e-35	140.00
IUUC-Pte-104135	Pyrenophora teres	30.73	5.00e-42	166.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	30.43	2.00e-43	169.00
IUUC-Rno-105114	Rattus norvegicus	34.52	4.00e-56	211.00
IUUC-Sce-106401	Saccharomyces cerevisiae	28.69	2.00e-44	172.00
IUUC-Sha-107122	Sarcophilus harrisii	35.22	2.00e-61	229.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.67	1.00e-40	160.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.25	1.00e-39	156.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	29.11	1.00e-42	166.00
IUUC-Smo-108720	Selaginella moellendorffii	49.88	5.00e-120	423.00
IUUC-Sit-110354	Setaria italica	85.88	0.00e+00	756.00
IUUC-Sly-111023	Solanum lycopersicum	58.00	4.00e-153	533.00
IUUC-Stu-112778	Solanum tuberosum	64.29	5.00e-162	563.00
IUUC-Sar-113596	Sorex araneus	31.99	8.00e-42	163.00
IUUC-Sbi-114193	Sorghum bicolor	82.83	0.00e+00	698.00
IUUC-Sre-115002	Sporisorium reilianum	29.73	7.00e-17	81.30
IUUC-Ssc-116066	Sus scrofa	34.84	1.00e-56	213.00
IUUC-Tgu-117048	Taeniopygia guttata	36.17	7.00e-57	213.00
IUUC-Tni-119820	Tetraodon nigroviridis	35.39	2.00e-62	232.00
IUUC-Tca-121605	Theobroma cacao	64.88	2.00e-169	587.00
IUUC-Tre-121947	Trichoderma reesei	28.03	6.00e-35	141.00
IUUC-Tvi-122481	Trichoderma virens	27.86	2.00e-34	139.00
IUUC-Tae-123504	Triticum aestivum	84.95	0.00e+00	761.00
IUUC-Tur-126586	Triticum urartu	84.92	0.00e+00	703.00
IUUC-Tme-126900	Tuber melanosporum	32.21	1.00e-53	203.00
IUUC-Tbe-127736	Tupaia belangeri	32.75	5.00e-20	91.70
IUUC-Ttr-129041	Tursiops truncatus	30.55	5.00e-39	154.00
IUUC-Uma-129628	Ustilago maydis	26.28	3.00e-09	55.80
IUUC-Vpa-130260	Vicugna pacos	34.84	2.00e-56	212.00
IUUC-Vvi-131009	Vitis vinifera	66.06	3.00e-176	610.00
IUUC-Xtr-132083	Xenopus tropicalis	35.41	1.00e-60	226.00
IUUC-Xma-133094	Xiphophorus maculatus	34.04	2.00e-64	239.00
IUUC-Yli-134531	Yarrowia lipolytica	27.34	9.00e-32	130.00
IUUC-Zma-135509	Zea mays	83.29	0.00e+00	733.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence