iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000004727.7	ENSRNOT00000079168.1	ENSRNOP00000072699.1
ENSRNOG00000004727.7	ENSRNOT00000089161.1	ENSRNOP00000075343.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.70e-08	33.2	122	154

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDl 30
           gH+d +++l f   +   ++s sdD+t+++W+l
   Q: 122  GHSDFINDLVFhpREgQEIASVSDDHTCRIWSL 154
           8**********9866789*************97 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MKQDVTRNAA YTVDCEDYVH VVEFNPFESG ESGNLIAYGG SNYVVVGMCM FQEEGTDTEG 60
IQYKTLRTFH HGVRVDGIAW SPETKLDSLP PVIKFCTSAA DMKIRLFTSD LQDKNEYKVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTCGACCAC TTTCATATTT TCAATGGGCA AGTTCAGTTT CTCGTGTAAG AAGTATTTCC 60
ACGTCAGTAA GACATCGCTG AGACAGACGG TGAATTCTCC GTGATGCTGA AAGAGGCAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0406--Ion transport
KW-0472--Membrane
KW-0626--Porin
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0812--Transmembrane
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000776--C:kinetochore
GO:0031080--C:nuclear pore outer ring
GO:0005654--C:nucleoplasm
GO:0046930--C:pore complex
GO:0015288--F:porin activity

KEGG

rno:299706

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002109	Ailuropoda melanoleuca	89.26	3.00e-173	600.00
IUUC-Aca-004272	Anolis carolinensis	74.85	4.00e-155	540.00
IUUC-Bta-012525	Bos taurus	89.88	1.00e-180	625.00
IUUC-Cfa-020623	Canis familiaris	88.65	1.00e-179	621.00
IUUC-Cpo-021545	Cavia porcellus	85.58	5.00e-174	603.00
IUUC-Csa-023698	Chlorocebus sabaeus	89.26	0.00e+00	626.00
IUUC-Cho-024401	Choloepus hoffmanni	85.43	3.00e-133	467.00
IUUC-Cin-025648	Ciona intestinalis	35.00	6.00e-41	160.00
IUUC-Csv-025913	Ciona savignyi	30.88	1.00e-37	149.00
IUUC-Dre-027990	Danio rerio	66.56	3.00e-138	484.00
IUUC-Dor-031077	Dipodomys ordii	87.77	1.00e-176	612.00
IUUC-Dme-031831	Drosophila melanogaster	32.00	2.00e-40	159.00
IUUC-Ete-032819	Echinops telfairi	85.58	1.00e-174	605.00
IUUC-Eca-033212	Equus caballus	89.88	0.00e+00	627.00
IUUC-Fca-036071	Felis catus	87.01	4.00e-178	617.00
IUUC-Fal-036718	Ficedula albicollis	77.30	5.00e-162	563.00
IUUC-Gmo-039710	Gadus morhua	65.64	2.00e-137	481.00
IUUC-Gga-041026	Gallus gallus	76.69	6.00e-162	563.00
IUUC-Gac-041726	Gasterosteus aculeatus	66.87	6.00e-141	493.00
IUUC-Ggo-045372	Gorilla gorilla	89.57	0.00e+00	628.00
IUUC-Hsa-046002	Homo sapiens	89.26	0.00e+00	626.00
IUUC-Itr-048542	Ictidomys tridecemlineatus	88.65	5.00e-180	623.00
IUUC-Lch-049456	Latimeria chalumnae	73.01	4.00e-142	497.00
IUUC-Loc-052159	Lepisosteus oculatus	55.95	5.00e-115	407.00
IUUC-Laf-053514	Loxodonta africana	87.73	6.00e-179	619.00
IUUC-Mcc-055148	Macaca mulatta	89.26	0.00e+00	626.00
IUUC-Meu-056644	Macropus eugenii	65.64	6.00e-127	446.00
IUUC-Mga-060061	Meleagris gallopavo	75.77	3.00e-160	557.00
IUUC-Mmr-061448	Microcebus murinus	88.96	0.00e+00	627.00
IUUC-Mdo-063006	Monodelphis domestica	82.21	2.00e-169	588.00
IUUC-Mmu-063269	Mus musculus	96.01	0.00e+00	664.00
IUUC-Mpu-066663	Mustela putorius furo	88.34	8.00e-179	619.00
IUUC-Nle-069989	Nomascus leucogenys	89.26	0.00e+00	626.00
IUUC-Ont-072544	Oreochromis niloticus	66.26	7.00e-137	479.00
IUUC-Oan-073360	Ornithorhynchus anatinus	79.38	1.00e-165	575.00
IUUC-Ola-087370	Oryzias latipes	62.88	2.00e-129	454.00
IUUC-Oar-089696	Ovis aries	89.88	0.00e+00	626.00
IUUC-Ptr-091333	Pan troglodytes	89.26	0.00e+00	626.00
IUUC-Pan-091814	Papio anubis	89.26	0.00e+00	626.00
IUUC-Psi-093497	Pelodiscus sinensis	79.75	3.00e-166	577.00
IUUC-Pfo-096789	Poecilia formosa	68.20	6.00e-140	489.00
IUUC-Pab-098451	Pongo abelii	88.96	1.00e-180	625.00
IUUC-Pca-101057	Procavia capensis	72.26	6.00e-114	403.00
IUUC-Pva-102866	Pteropus vampyrus	89.88	0.00e+00	632.00
IUUC-Pgr-103570	Puccinia graminis	24.74	2.00e-09	56.60
IUUC-Sha-106639	Sarcophilus harrisii	82.52	1.00e-170	591.00
IUUC-Sja-108011	Schizosaccharomyces japonicus	25.56	1.00e-08	54.30
IUUC-Spo-108334	Schizosaccharomyces pombe	28.00	6.00e-10	58.50
IUUC-Ssc-115982	Sus scrofa	85.04	2.00e-140	491.00
IUUC-Tgu-116575	Taeniopygia guttata	76.99	3.00e-161	560.00
IUUC-Tru-117729	Takifugu rubripes	66.26	7.00e-138	483.00
IUUC-Tsy-118870	Tarsius syrichta	75.15	4.00e-146	510.00
IUUC-Tni-120524	Tetraodon nigroviridis	67.17	9.00e-138	482.00
IUUC-Ttr-128693	Tursiops truncatus	83.44	4.00e-158	550.00
IUUC-Vpa-130328	Vicugna pacos	87.23	8.00e-163	565.00
IUUC-Xtr-132017	Xenopus tropicalis	70.86	5.00e-145	506.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence