iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099995

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_753906; POPTR_0002s01090g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s01090	POPTR_0002s01090.1	POPTR_0002s01090.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	8.80e-33	113.3	265	336

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +p+eflCpI+le+M+dPv+++sG+ty+r+sI+kw++s+++tcP+tr++l++ +l Pn++l++li +wce n+
   Q: 265  IPHEFLCPITLEIMTDPVIVASGQTYERESIQKWIDSNHRTCPKTRETLAHLSLAPNYALKNLILQWCENNN 336
           79*******************************************************************986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MVMDGERDQE STESNESSPR EEIDIAQEIL SVIESVARLG DYRRSHKKEC YGLVRRMKLL 60
LPFLEEIKDF DGPISDVGIA SLSSLKKALV LAKKLLTTCN EGSKIYLVVE SEAVMMRFHN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTGATGG ATGGAGAAAG AGATCAGGAA AGTACTGAAT CAAATGAATC AAGCCCACGA 60
GAGGAAATCG ATATTGCTCA AGAGATCTTG AGCGTGATTG AATCTGTTGC CAGACTTGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0002s01090g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000563	Aegilops tauschii	59.10	0.00e+00	706.00
IUUC-Atr-002787	Amborella trichopoda	64.40	0.00e+00	769.00
IUUC-Aly-006301	Arabidopsis lyrata	66.67	0.00e+00	828.00
IUUC-Ath-007379	Arabidopsis thaliana	65.53	0.00e+00	813.00
IUUC-Bdi-014836	Brachypodium distachyon	56.94	0.00e+00	721.00
IUUC-Bol-016076	Brassica oleracea	63.73	0.00e+00	811.00
IUUC-Bra-017350	Brassica rapa	66.07	0.00e+00	812.00
IUUC-Gma-042825	Glycine max	69.04	0.00e+00	802.00
IUUC-Hvu-047325	Hordeum vulgare	59.38	0.00e+00	679.00
IUUC-Itr-048617	Ictidomys tridecemlineatus	28.57	5.00e-10	59.70
IUUC-Lpe-051266	Leersia perrieri	56.14	0.00e+00	664.00
IUUC-Mtr-058419	Medicago truncatula	66.94	0.00e+00	832.00
IUUC-Mac-064853	Musa acuminata	54.55	1.00e-176	612.00
IUUC-Oba-075533	Oryza barthii	58.62	0.00e+00	671.00
IUUC-Obr-076561	Oryza brachyantha	59.21	0.00e+00	678.00
IUUC-Ogl-077209	Oryza glaberrima	58.62	0.00e+00	671.00
IUUC-Ogu-078607	Oryza glumaepatula	58.95	0.00e+00	675.00
IUUC-Oin-080162	Oryza indica	58.95	0.00e+00	675.00
IUUC-Olo-080856	Oryza longistaminata	59.18	0.00e+00	675.00
IUUC-Ome-081763	Oryza meridionalis	59.11	0.00e+00	677.00
IUUC-Oni-082893	Oryza nivara	58.95	0.00e+00	675.00
IUUC-Opu-084068	Oryza punctata	58.48	0.00e+00	672.00
IUUC-Oru-085267	Oryza rufipogon	58.95	0.00e+00	675.00
IUUC-Osa-085448	Oryza sativa	58.95	0.00e+00	675.00
IUUC-Ppe-101219	Prunus persica	73.28	0.00e+00	939.00
IUUC-Sit-110463	Setaria italica	59.47	0.00e+00	653.00
IUUC-Sly-111424	Solanum lycopersicum	62.93	0.00e+00	805.00
IUUC-Stu-112097	Solanum tuberosum	62.10	0.00e+00	806.00
IUUC-Sbi-114691	Sorghum bicolor	60.44	0.00e+00	646.00
IUUC-Tca-121852	Theobroma cacao	73.14	0.00e+00	877.00
IUUC-Tae-122916	Triticum aestivum	59.38	0.00e+00	679.00
IUUC-Tur-126004	Triticum urartu	61.62	0.00e+00	662.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence