iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099015

Ensembl Protein ID

POPTR_0003s13810.1

UniProt Accession

A9PBA3; A9PBA3_POPTR

Genbank Protein ID

ABK93656.1; EEE78618.1

Protein Name

Seh1 family protein

Genbank Nucleotide ID

EF145503; CM000339

Gene Name

POPTRDRAFT_817403; POPTR_0003s13810g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s13810	POPTR_0003s13810.1	POPTR_0003s13810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-10	42.0	280	308

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf..sdtllvsGsdDgtikvWD 29
           +++v+ +++  s+ +l++++ Dg +++W 
   Q: 280  EGEVWQMEWdmSGMTLATSGTDGMVRLWQ 308
           6789*****8877669************5 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEKSVATLDK GTTCTSWNYC GQRLATGSFN GFLSIFDSPD PASSSFTATS NIRIHEGGIV 60
KIVWIPPEYG DAVACICGDG SLSLWEEIAE DGLPLQWKLC KIFHCKGSKV LDAQFGVIRT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAGGAATTC GCGCATCTTG TGTGTTGAGA CATGGAGAAA TCAGTGGCAA CACTAGATAA 60
AGGCACTACA TGCACTTCAT GGAACTACTG TGGCCAAAGA CTAGCAACTG GTTCTTTTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005635--C:nuclear envelope

KEGG

pop:POPTR_0003s13810g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003124	Amborella trichopoda	69.15	6.00e-82	296.00
IUUC-Apl-003654	Anas platyrhynchos	27.34	1.00e-24	106.00
IUUC-Aca-004378	Anolis carolinensis	27.50	1.00e-24	106.00
IUUC-Aly-005963	Arabidopsis lyrata	68.11	3.00e-127	447.00
IUUC-Ath-007107	Arabidopsis thaliana	68.42	9.00e-131	459.00
IUUC-Bdi-014594	Brachypodium distachyon	58.26	5.00e-113	400.00
IUUC-Bol-016565	Brassica oleracea	67.59	5.00e-125	439.00
IUUC-Bra-017831	Brassica rapa	68.32	7.00e-126	442.00
IUUC-Cho-024660	Choloepus hoffmanni	27.11	1.00e-24	106.00
IUUC-Eca-033425	Equus caballus	26.76	1.00e-24	106.00
IUUC-Fal-037234	Ficedula albicollis	27.37	8.00e-24	106.00
IUUC-Gma-044300	Glycine max	72.39	2.00e-132	464.00
IUUC-Hvu-047455	Hordeum vulgare	57.76	2.00e-111	394.00
IUUC-Itr-048858	Ictidomys tridecemlineatus	27.11	5.00e-25	107.00
IUUC-Lpe-051064	Leersia perrieri	58.26	1.00e-112	399.00
IUUC-Meu-055958	Macropus eugenii	27.23	1.00e-17	83.60
IUUC-Mtr-057876	Medicago truncatula	66.77	2.00e-128	451.00
IUUC-Mla-058820	Melampsora laricipopulina	24.72	1.00e-16	80.50
IUUC-Mga-059348	Meleagris gallopavo	26.88	9.00e-25	106.00
IUUC-Mac-064960	Musa acuminata	63.58	6.00e-113	399.00
IUUC-Nle-068977	Nomascus leucogenys	26.73	1.00e-25	110.00
IUUC-Oan-073098	Ornithorhynchus anatinus	27.11	1.00e-25	109.00
IUUC-Oba-075325	Oryza barthii	54.21	4.00e-100	357.00
IUUC-Obr-076089	Oryza brachyantha	57.32	1.00e-110	392.00
IUUC-Ogl-077279	Oryza glaberrima	57.32	8.00e-110	389.00
IUUC-Ogu-078901	Oryza glumaepatula	54.21	5.00e-100	356.00
IUUC-Oin-079385	Oryza indica	55.00	2.00e-108	385.00
IUUC-Ome-081809	Oryza meridionalis	60.74	2.00e-100	360.00
IUUC-Oni-082185	Oryza nivara	52.96	1.00e-95	342.00
IUUC-Opu-083324	Oryza punctata	56.07	1.00e-105	375.00
IUUC-Oru-084801	Oryza rufipogon	57.63	2.00e-110	391.00
IUUC-Osa-085790	Oryza sativa	57.32	8.00e-110	389.00
IUUC-Olu-087855	Ostreococcus lucimarinus	22.12	2.00e-11	62.80
IUUC-Oar-090298	Ovis aries	27.46	6.00e-24	107.00
IUUC-Psi-093508	Pelodiscus sinensis	27.70	7.00e-25	107.00
IUUC-Ppa-095228	Physcomitrella patens	44.12	1.00e-69	255.00
IUUC-Ppe-101303	Prunus persica	74.85	2.00e-143	501.00
IUUC-Rno-104895	Rattus norvegicus	29.50	8.00e-29	123.00
IUUC-Sha-106829	Sarcophilus harrisii	26.95	8.00e-27	114.00
IUUC-Smo-109282	Selaginella moellendorffii	41.72	6.00e-67	246.00
IUUC-Sit-110393	Setaria italica	57.94	4.00e-111	394.00
IUUC-Sly-111125	Solanum lycopersicum	69.23	3.00e-130	457.00
IUUC-Stu-112745	Solanum tuberosum	62.26	1.00e-129	455.00
IUUC-Sar-113279	Sorex araneus	26.76	1.00e-24	106.00
IUUC-Sbi-114110	Sorghum bicolor	57.32	3.00e-110	390.00
IUUC-Ssc-115589	Sus scrofa	26.22	1.00e-24	106.00
IUUC-Tca-120999	Theobroma cacao	64.29	5.00e-124	438.00
IUUC-Tae-122796	Triticum aestivum	58.39	8.00e-114	402.00
IUUC-Tur-126582	Triticum urartu	59.64	2.00e-101	361.00
IUUC-Tbe-127344	Tupaia belangeri	24.77	3.00e-15	75.90
IUUC-Ttr-128347	Tursiops truncatus	27.46	3.00e-25	108.00
IUUC-Vpa-130656	Vicugna pacos	27.11	7.00e-25	107.00
IUUC-Vvi-131103	Vitis vinifera	76.31	6.00e-150	522.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence