iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114282

Ensembl Protein ID

Sb10g025320.1

UniProt Accession

C5Z6Q2; C5Z6Q2_SORBI

Genbank Protein ID

EER88714.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000769

Gene Name

SORBI_010G205900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb10g025320	Sb10g025320.1	Sb10g025320.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-30	104.9	556	587
UBD/Beta-Prp	2.00e-53	182.3	93	357

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHtd++t+l+f  d + l+s+s Dgt+++WD+
   Q: 556  GHTDRITDLCFsEDgKWLISSSMDGTLRIWDI 587
           8**********955699**************5 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl....lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           h+++v        ++++++++ + g +  w ++        + s+s  ++++ ++ ++pd+     + gse + +++w++st k ++ ++g ++ v
   Q: 93   HEEKVNMLYL---FGEYVLSADAKGNVFMWAFRGAEPntepVGSISLGDKFTPTCIMHPDTYlnKVIVGSEEGPLQLWNISTKKKLYDFNGWNSPV 185
           4444444444...59****************9986668899****99999**********866789****************************** PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng 192
           +++ +sp  d++++G +d  ++v +++ +++l +++ + +g+v+ +++  dg  ll+sG+  +++ +W+l+ ++l    +++h++s+ sl f  n 
   Q: 186  RCCVSSPALDVVAVGCSDGSVHVHNVRYDEELMSFNHQIRGAVTALSFRTDGqPLLASGGSSGVISIWNLEKKRLHSVIREAHDGSIVSLHFFANE 281
           ************************************************************************************************ PP
   S: 193  kelvsgsldgtvklwdlq....tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn 264
           + l+s + d+++k+w +       + +r   gh+++++++rf  n++ ++s+++D+  r++ + +++  + l++++
   Q: 282  PILMSSAADNSIKMWIFDsndgDARLLRFRSGHSAPPRCIRFYGNGKCILSAGQDRAFRLFSVIQDQQSRELSQRH 357
           ***************9996666566699999******************************888888888888777 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MGIFEPFRAI GYITAGGVPF SVQRLGTETF VTVSVGKAFQ VYNCAKLNLV LSGPQLPKKI 60
RAIACYKDYT FAAYGSDIAV FKRTDQVATW SRHEEKVNML YLFGEYVLSA DAKGNVFMWA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGGATCT TCGAGCCGTT CCGTGCAATC GGCTACATCA CGGCGGGCGG CGTGCCCTTC 60
TCCGTGCAGC GCCTCGGCAC CGAGACCTTC GTCACTGTCA GCGTCGGCAA GGCCTTCCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing

KEGG

sbi:SORBI_10g025320

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001096	Aegilops tauschii	86.64	0.00e+00	1551.00
IUUC-Aml-002289	Ailuropoda melanoleuca	36.10	2.00e-146	512.00
IUUC-Atr-002859	Amborella trichopoda	67.33	0.00e+00	1145.00
IUUC-Apl-003505	Anas platyrhynchos	37.79	1.00e-138	486.00
IUUC-Aca-004339	Anolis carolinensis	34.77	2.00e-142	499.00
IUUC-Aly-005913	Arabidopsis lyrata	69.26	0.00e+00	1251.00
IUUC-Ath-006767	Arabidopsis thaliana	69.33	0.00e+00	1256.00
IUUC-Ago-007763	Ashbya gossypii	29.84	6.00e-110	391.00
IUUC-Acl-008275	Aspergillus clavatus	30.87	6.00e-80	291.00
IUUC-Afl-008457	Aspergillus flavus	30.25	8.00e-72	264.00
IUUC-Afu-008914	Aspergillus fumigatus	29.24	2.00e-83	303.00
IUUC-Ani-009225	Aspergillus nidulans	31.07	5.00e-88	318.00
IUUC-Aor-010046	Aspergillus oryzae	29.98	8.00e-100	357.00
IUUC-Ate-010337	Aspergillus terreus	29.57	6.00e-96	344.00
IUUC-Ame-010963	Astyanax mexicanus	35.19	1.00e-139	489.00
IUUC-Bgr-011973	Blumeria graminis	28.69	7.00e-103	367.00
IUUC-Bta-012462	Bos taurus	36.37	1.00e-145	509.00
IUUC-Bci-013940	Botrytis cinerea	30.62	2.00e-121	429.00
IUUC-Bdi-014725	Brachypodium distachyon	88.18	0.00e+00	1623.00
IUUC-Bol-016534	Brassica oleracea	69.74	0.00e+00	1268.00
IUUC-Bra-016781	Brassica rapa	67.54	0.00e+00	1232.00
IUUC-Cel-018581	Caenorhabditis elegans	27.23	4.00e-81	295.00
IUUC-Cja-019675	Callithrix jacchus	35.16	8.00e-152	530.00
IUUC-Cfa-020118	Canis familiaris	36.76	2.00e-145	509.00
IUUC-Cpo-021798	Cavia porcellus	36.18	3.00e-145	508.00
IUUC-Cre-022566	Chlamydomonas reinhardtii	34.31	3.00e-44	172.00
IUUC-Csa-023547	Chlorocebus sabaeus	35.56	1.00e-142	500.00
IUUC-Cho-024518	Choloepus hoffmanni	32.49	1.00e-99	356.00
IUUC-Cin-025339	Ciona intestinalis	34.16	1.00e-148	519.00
IUUC-Cgl-026476	Colletotrichum gloeosporioides	29.60	2.00e-101	363.00
IUUC-Cne-026859	Cryptococcus neoformans	33.63	1.00e-134	473.00
IUUC-Cme-027173	Cyanidioschyzon merolae	28.19	8.00e-81	294.00
IUUC-Dre-027733	Danio rerio	35.23	9.00e-139	486.00
IUUC-Dno-029439	Dasypus novemcinctus	36.22	3.00e-141	494.00
IUUC-Dor-030329	Dipodomys ordii	33.20	3.00e-61	229.00
IUUC-Dse-031511	Dothistroma septosporum	30.49	3.00e-101	362.00
IUUC-Dme-031694	Drosophila melanogaster	32.86	1.00e-128	453.00
IUUC-Ete-032930	Echinops telfairi	40.24	3.00e-110	392.00
IUUC-Eca-033302	Equus caballus	36.14	3.00e-144	505.00
IUUC-Eeu-034516	Erinaceus europaeus	36.21	3.00e-152	531.00
IUUC-Fca-036064	Felis catus	36.04	3.00e-144	504.00
IUUC-Fal-037024	Ficedula albicollis	35.66	2.00e-147	515.00
IUUC-Fox-037787	Fusarium oxysporum	30.43	4.00e-99	355.00
IUUC-Fso-038378	Fusarium solani	30.85	8.00e-104	370.00
IUUC-Gmo-039637	Gadus morhua	36.22	4.00e-81	294.00
IUUC-Ggr-040108	Gaeumannomyces graminis	30.29	1.00e-95	343.00
IUUC-Gga-040982	Gallus gallus	35.04	4.00e-155	541.00
IUUC-Gac-041565	Gasterosteus aculeatus	35.46	6.00e-134	471.00
IUUC-Gma-043414	Glycine max	69.98	0.00e+00	1295.00
IUUC-Ggo-045463	Gorilla gorilla	35.30	1.00e-142	499.00
IUUC-Hsa-045675	Homo sapiens	35.04	9.00e-145	506.00
IUUC-Hvu-047352	Hordeum vulgare	86.90	0.00e+00	1442.00
IUUC-Itr-048088	Ictidomys tridecemlineatus	35.26	4.00e-152	531.00
IUUC-Kpa-049164	Komagataella pastoris	31.46	2.00e-113	402.00
IUUC-Lch-050476	Latimeria chalumnae	34.43	5.00e-150	524.00
IUUC-Lpe-051556	Leersia perrieri	70.86	0.00e+00	1226.00
IUUC-Loc-052820	Lepisosteus oculatus	35.53	1.00e-150	526.00
IUUC-Lma-052961	Leptosphaeria maculans	29.83	2.00e-94	340.00
IUUC-Laf-054006	Loxodonta africana	34.43	7.00e-135	473.00
IUUC-Mcc-055037	Macaca mulatta	35.16	3.00e-143	501.00
IUUC-Mor-057280	Magnaporthe oryzae	28.45	9.00e-97	347.00
IUUC-Mpo-057408	Magnaporthe poae	28.49	1.00e-92	334.00
IUUC-Mtr-058473	Medicago truncatula	71.13	0.00e+00	1318.00
IUUC-Mla-058892	Melampsora laricipopulina	33.38	6.00e-110	390.00
IUUC-Mga-059598	Meleagris gallopavo	30.51	1.00e-106	379.00
IUUC-Mvi-060334	Microbotryum violaceum	34.21	6.00e-116	411.00
IUUC-Mmr-061239	Microcebus murinus	35.96	8.00e-143	500.00
IUUC-Mdo-062471	Monodelphis domestica	36.14	7.00e-143	500.00
IUUC-Mmu-063872	Mus musculus	36.42	7.00e-154	536.00
IUUC-Mac-064631	Musa acuminata	73.97	0.00e+00	1244.00
IUUC-Mpu-066039	Mustela putorius furo	36.14	4.00e-156	544.00
IUUC-Mlu-067485	Myotis lucifugus	35.96	6.00e-142	497.00
IUUC-Nfi-068319	Neosartorya fischeri	28.52	4.00e-97	348.00
IUUC-Ncr-068725	Neurospora crassa	30.09	4.00e-102	365.00
IUUC-Nle-069050	Nomascus leucogenys	35.60	3.00e-144	505.00
IUUC-Opr-070437	Ochotona princeps	42.18	6.00e-47	181.00
IUUC-Ont-071574	Oreochromis niloticus	35.64	2.00e-144	505.00
IUUC-Oan-072826	Ornithorhynchus anatinus	36.94	4.00e-156	544.00
IUUC-Ocu-073995	Oryctolagus cuniculus	36.66	2.00e-140	492.00
IUUC-Oba-075407	Oryza barthii	79.31	0.00e+00	1416.00
IUUC-Obr-076451	Oryza brachyantha	86.84	0.00e+00	1638.00
IUUC-Ogl-077535	Oryza glaberrima	87.13	0.00e+00	1610.00
IUUC-Ogu-077995	Oryza glumaepatula	78.35	0.00e+00	1422.00
IUUC-Oin-079431	Oryza indica	87.61	0.00e+00	1618.00
IUUC-Olo-080495	Oryza longistaminata	77.57	0.00e+00	1387.00
IUUC-Oni-082336	Oryza nivara	83.85	0.00e+00	1515.00
IUUC-Opu-084028	Oryza punctata	77.96	0.00e+00	1328.00
IUUC-Oru-084500	Oryza rufipogon	78.21	0.00e+00	1410.00
IUUC-Osa-086242	Oryza sativa	87.72	0.00e+00	1620.00
IUUC-Ola-086612	Oryzias latipes	36.53	1.00e-114	406.00
IUUC-Olu-087703	Ostreococcus lucimarinus	36.02	1.00e-155	543.00
IUUC-Oga-088572	Otolemur garnettii	36.13	7.00e-145	507.00
IUUC-Oar-090363	Ovis aries	36.36	2.00e-147	515.00
IUUC-Ptr-090477	Pan troglodytes	35.27	7.00e-143	500.00
IUUC-Pan-092914	Papio anubis	35.16	9.00e-144	503.00
IUUC-Psi-093019	Pelodiscus sinensis	34.46	6.00e-140	491.00
IUUC-Pma-094303	Petromyzon marinus	33.37	8.00e-119	420.00
IUUC-Pno-094938	Phaeosphaeria nodorum	29.40	3.00e-88	319.00
IUUC-Ppa-095720	Physcomitrella patens	53.10	0.00e+00	989.00
IUUC-Pfo-097034	Poecilia formosa	35.09	7.00e-136	477.00
IUUC-Pab-097669	Pongo abelii	35.15	9.00e-146	510.00
IUUC-Pop-098835	Populus trichocarpa	72.45	0.00e+00	1321.00
IUUC-Pca-101097	Procavia capensis	37.78	2.00e-58	220.00
IUUC-Ppe-101430	Prunus persica	71.55	0.00e+00	1341.00
IUUC-Pva-103152	Pteropus vampyrus	36.04	3.00e-147	514.00
IUUC-Pgr-103517	Puccinia graminis	30.29	2.00e-129	456.00
IUUC-Ptt-103697	Puccinia triticina	30.36	3.00e-99	355.00
IUUC-Pte-104121	Pyrenophora teres	29.12	5.00e-97	348.00
IUUC-Pyt-104672	Pyrenophora triticirepentis	29.29	1.00e-97	350.00
IUUC-Rno-105435	Rattus norvegicus	36.24	8.00e-152	530.00
IUUC-Sce-106202	Saccharomyces cerevisiae	29.97	1.00e-99	357.00
IUUC-Sha-107272	Sarcophilus harrisii	35.93	2.00e-138	485.00
IUUC-Sja-107744	Schizosaccharomyces japonicus	35.75	3.00e-147	515.00
IUUC-Spo-108256	Schizosaccharomyces pombe	35.32	2.00e-151	528.00
IUUC-Ssl-108618	Sclerotinia sclerotiorum	29.57	6.00e-115	407.00
IUUC-Smo-108762	Selaginella moellendorffii	54.60	0.00e+00	997.00
IUUC-Sit-110051	Setaria italica	90.61	0.00e+00	1672.00
IUUC-Sly-111181	Solanum lycopersicum	69.27	0.00e+00	1266.00
IUUC-Stu-112018	Solanum tuberosum	70.11	0.00e+00	1280.00
IUUC-Sar-113348	Sorex araneus	35.49	9.00e-100	357.00
IUUC-Sre-114946	Sporisorium reilianum	30.23	3.00e-83	302.00
IUUC-Ssc-115287	Sus scrofa	36.68	1.00e-146	513.00
IUUC-Tgu-117138	Taeniopygia guttata	34.49	8.00e-121	427.00
IUUC-Tru-118232	Takifugu rubripes	35.33	4.00e-140	491.00
IUUC-Tsy-119502	Tarsius syrichta	29.15	1.00e-97	350.00
IUUC-Tni-120378	Tetraodon nigroviridis	37.17	3.00e-139	488.00
IUUC-Tca-121506	Theobroma cacao	72.01	0.00e+00	1302.00
IUUC-Tre-122166	Trichoderma reesei	29.57	6.00e-110	391.00
IUUC-Tvi-122385	Trichoderma virens	30.08	2.00e-112	399.00
IUUC-Tae-122836	Triticum aestivum	86.22	0.00e+00	1632.00
IUUC-Tur-126490	Triticum urartu	74.77	0.00e+00	1284.00
IUUC-Tme-127157	Tuber melanosporum	31.87	5.00e-109	388.00
IUUC-Tbe-127981	Tupaia belangeri	39.17	6.00e-130	457.00
IUUC-Ttr-128886	Tursiops truncatus	35.49	6.00e-142	497.00
IUUC-Uma-129439	Ustilago maydis	31.06	7.00e-90	324.00
IUUC-Vda-129760	Verticillium dahliae	29.22	5.00e-108	384.00
IUUC-Vpa-130456	Vicugna pacos	35.64	9.00e-143	500.00
IUUC-Vvi-131086	Vitis vinifera	71.52	0.00e+00	1354.00
IUUC-Xtr-131829	Xenopus tropicalis	36.24	4.00e-162	564.00
IUUC-Xma-133588	Xiphophorus maculatus	33.55	2.00e-130	459.00
IUUC-Yli-134328	Yarrowia lipolytica	32.06	4.00e-104	371.00
IUUC-Zma-135808	Zea mays	95.19	0.00e+00	1782.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence