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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105264
Ensembl Protein ID ENSRNOP00000036139.3
UniProt Accession G3V953; G3V953_RAT
Genbank Protein ID EDM17545.1
Protein Name RB-binding protein 6, ubiquitin ligase; Retinoblastoma binding protein 6, isoform CRA_a
Genbank Nucleotide ID AABR07005664
Gene Name Rbbp6; rCG_40161
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000012806.8 ENSRNOT00000035770.6 ENSRNOP00000036139.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/U-box 9.70e-10 38.8 254 327
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/U-box
   S: 2    vpeeflCpIslelMrdPvvlp.sGitydrssIekwl.asggktcPvtrqpl.teedlvPnltlrrliqawceen 72
           +p+e+lC I +++M+d vv+p +G +y  ++I+  l +s+++tcP+++q   +++ l+ n++lr+ ++++ +e 
   Q: 254  IPDELLCLICKDIMTDAVVIPcCGNSYCDECIRTALlESDEHTCPTCHQNDvSPDALIANKFLRQAVNNFKNET 327
           8********************************998677777*****9975599999*********99998765 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSCVHYKFSS KLNYDTVTFD GLHISLCDLK KQIMGREKLK AADSDLQITN AQTKEEYTDD 60
NALIPKNSSV IVRRIPIGGV KSTSKTYVIS RTEPVMGTTK AIDDSSASIS LAQLTKTANL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105264|E3,U-box|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTGAGTACGG GGGGGTTCCG GATTATTGTT CTCACGAACC CCCGCTTGTG GTTGGGGGGT 60
ATTTAATCTG AGGCCTTAGG GTCCTTCGTT GTCTTTTGAG TGTTTTGTGT GTGTACATAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105264|E3,U-box|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR014891--DWNN_domain
IPR033489--RBBP6
IPR003613--Ubox_domain
IPR025829--Zn_knuckle_CX2CX3GHX4C
IPR001878--Znf_CCHC
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS51282--DWNN
PS50158--ZF_CCHC
PS50089--ZF_RING_2
Pfam

PF08783--DWNN
PF04564--U-box
PF13696--zf-CCHC_2
SMART

SM01180--DWNN
SM00184--RING
SM00343--ZnF_C2HC
Gene Ontology

GO:0005634--C:nucleus
GO:0003723--F:RNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0006974--P:cellular response to DNA damage stimulus
GO:0048568--P:embryonic organ development
GO:0001701--P:in utero embryonic development
GO:0006397--P:mRNA processing
GO:0035264--P:multicellular organism growth
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0006275--P:regulation of DNA replication
GO:0061053--P:somite development
KEGG rno:308968
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000195 Aegilops tauschii 29.87 3.00e-26 113.00
IUUC-Aml-001655 Ailuropoda melanoleuca 78.18 0.00e+00 1006.00
IUUC-Atr-002768 Amborella trichopoda 38.69 9.00e-18 85.50
IUUC-Apl-004100 Anas platyrhynchos 64.42 0.00e+00 802.00
IUUC-Aca-004345 Anolis carolinensis 66.90 1.00e-114 407.00
IUUC-Aly-006036 Arabidopsis lyrata 30.54 1.00e-34 141.00
IUUC-Ath-006684 Arabidopsis thaliana 31.13 1.00e-34 141.00
IUUC-Ago-007949 Ashbya gossypii 29.71 7.00e-35 141.00
IUUC-Acl-008118 Aspergillus clavatus 31.01 4.00e-26 113.00
IUUC-Afl-008408 Aspergillus flavus 32.08 6.00e-16 78.60
IUUC-Afu-008777 Aspergillus fumigatus 31.59 3.00e-34 139.00
IUUC-Ani-009426 Aspergillus nidulans 30.83 3.00e-35 143.00
IUUC-Ang-009735 Aspergillus niger 30.08 3.00e-32 133.00
IUUC-Aor-010213 Aspergillus oryzae 31.82 5.00e-34 139.00
IUUC-Ate-010474 Aspergillus terreus 29.71 4.00e-31 129.00
IUUC-Ame-010679 Astyanax mexicanus 82.69 1.00e-164 574.00
IUUC-Bgr-012229 Blumeria graminis 32.34 9.00e-38 151.00
IUUC-Bta-012672 Bos taurus 81.05 0.00e+00 1120.00
IUUC-Bci-013880 Botrytis cinerea 31.41 8.00e-35 142.00
IUUC-Bdi-014250 Brachypodium distachyon 28.27 1.00e-35 145.00
IUUC-Bol-015602 Brassica oleracea 31.28 3.00e-39 157.00
IUUC-Bra-016670 Brassica rapa 31.28 5.00e-39 156.00
IUUC-Cel-018532 Caenorhabditis elegans 36.15 2.00e-54 207.00
IUUC-Cja-018843 Callithrix jacchus 80.41 0.00e+00 1166.00
IUUC-Cfa-021107 Canis familiaris 79.37 0.00e+00 1105.00
IUUC-Cre-022712 Chlamydomonas reinhardtii 27.20 1.00e-12 68.20
IUUC-Csa-023397 Chlorocebus sabaeus 79.87 0.00e+00 1174.00
IUUC-Cho-024327 Choloepus hoffmanni 96.30 0.00e+00 944.00
IUUC-Cin-025439 Ciona intestinalis 47.44 5.00e-48 184.00
IUUC-Csv-026162 Ciona savignyi 54.98 1.00e-55 209.00
IUUC-Cgl-026629 Colletotrichum gloeosporioides 30.40 2.00e-28 120.00
IUUC-Cne-026921 Cryptococcus neoformans 29.08 5.00e-39 155.00
IUUC-Cme-027244 Cyanidioschyzon merolae 45.05 6.00e-18 86.70
IUUC-Dre-028023 Danio rerio 75.77 2.00e-161 563.00
IUUC-Dno-029430 Dasypus novemcinctus 79.28 0.00e+00 1106.00
IUUC-Dor-030406 Dipodomys ordii 80.26 0.00e+00 1118.00
IUUC-Dse-031312 Dothistroma septosporum 30.61 4.00e-38 152.00
IUUC-Dme-032133 Drosophila melanogaster 43.07 2.00e-74 275.00
IUUC-Ete-032466 Echinops telfairi 75.98 0.00e+00 1019.00
IUUC-Eca-034174 Equus caballus 80.63 0.00e+00 890.00
IUUC-Eeu-034677 Erinaceus europaeus 94.54 0.00e+00 858.00
IUUC-Fca-035439 Felis catus 79.04 0.00e+00 1080.00
IUUC-Fal-037230 Ficedula albicollis 74.33 0.00e+00 753.00
IUUC-Fox-037976 Fusarium oxysporum 30.32 6.00e-35 142.00
IUUC-Fso-038202 Fusarium solani 29.56 4.00e-34 139.00
IUUC-Gmo-038618 Gadus morhua 67.15 2.00e-74 272.00
IUUC-Ggr-040035 Gaeumannomyces graminis 27.88 3.00e-31 130.00
IUUC-Gga-040908 Gallus gallus 74.74 0.00e+00 732.00
IUUC-Gac-041718 Gasterosteus aculeatus 71.17 2.00e-86 311.00
IUUC-Gma-044229 Glycine max 31.98 2.00e-40 160.00
IUUC-Ggo-044567 Gorilla gorilla 80.20 0.00e+00 1130.00
IUUC-Hsa-046849 Homo sapiens 80.52 0.00e+00 1134.00
IUUC-Hvu-047050 Hordeum vulgare 25.77 4.00e-23 103.00
IUUC-Itr-048832 Ictidomys tridecemlineatus 81.14 0.00e+00 1072.00
IUUC-Kpa-049323 Komagataella pastoris 30.91 2.00e-34 140.00
IUUC-Lch-050524 Latimeria chalumnae 68.98 0.00e+00 730.00
IUUC-Lpe-050947 Leersia perrieri 28.72 9.00e-30 125.00
IUUC-Loc-052709 Lepisosteus oculatus 83.07 4.00e-167 583.00
IUUC-Lma-053186 Leptosphaeria maculans 33.63 1.00e-35 144.00
IUUC-Laf-054472 Loxodonta africana 78.48 0.00e+00 1089.00
IUUC-Mcc-055743 Macaca mulatta 79.76 0.00e+00 1177.00
IUUC-Meu-056399 Macropus eugenii 78.68 0.00e+00 764.00
IUUC-Mor-057073 Magnaporthe oryzae 30.06 5.00e-32 132.00
IUUC-Mpo-057378 Magnaporthe poae 27.58 1.00e-30 128.00
IUUC-Mtr-058761 Medicago truncatula 31.64 6.00e-33 136.00
IUUC-Mla-058840 Melampsora laricipopulina 36.73 1.00e-24 108.00
IUUC-Mga-060129 Meleagris gallopavo 62.39 0.00e+00 759.00
IUUC-Mvi-060424 Microbotryum violaceum 35.85 1.00e-24 108.00
IUUC-Mmr-061295 Microcebus murinus 80.81 0.00e+00 1130.00
IUUC-Mdo-062295 Monodelphis domestica 70.32 0.00e+00 951.00
IUUC-Mmu-064009 Mus musculus 92.58 0.00e+00 1337.00
IUUC-Mac-065479 Musa acuminata 35.63 3.00e-24 107.00
IUUC-Mpu-065875 Mustela putorius furo 80.33 0.00e+00 1111.00
IUUC-Mlu-066941 Myotis lucifugus 79.02 0.00e+00 1027.00
IUUC-Nfi-068518 Neosartorya fischeri 31.88 2.00e-35 143.00
IUUC-Ncr-068886 Neurospora crassa 28.61 7.00e-32 132.00
IUUC-Nle-069717 Nomascus leucogenys 97.05 0.00e+00 1003.00
IUUC-Opr-070280 Ochotona princeps 94.62 0.00e+00 693.00
IUUC-Ont-071462 Oreochromis niloticus 66.31 4.00e-140 493.00
IUUC-Oan-073300 Ornithorhynchus anatinus 67.36 0.00e+00 855.00
IUUC-Ocu-074124 Oryctolagus cuniculus 80.15 0.00e+00 1176.00
IUUC-Oba-075756 Oryza barthii 30.75 4.00e-30 126.00
IUUC-Obr-076580 Oryza brachyantha 29.26 1.00e-33 138.00
IUUC-Ogl-077759 Oryza glaberrima 32.35 3.00e-36 147.00
IUUC-Ogu-078657 Oryza glumaepatula 29.97 5.00e-30 126.00
IUUC-Oin-079481 Oryza indica 32.47 2.00e-31 131.00
IUUC-Olo-081062 Oryza longistaminata 36.31 8.00e-23 102.00
IUUC-Ome-081813 Oryza meridionalis 29.84 2.00e-29 124.00
IUUC-Oni-083007 Oryza nivara 30.83 1.00e-29 125.00
IUUC-Opu-083385 Oryza punctata 29.84 1.00e-29 125.00
IUUC-Oru-084861 Oryza rufipogon 30.83 1.00e-29 125.00
IUUC-Osa-085896 Oryza sativa 32.18 3.00e-36 145.00
IUUC-Ola-086693 Oryzias latipes 62.67 2.00e-126 446.00
IUUC-Olu-087631 Ostreococcus lucimarinus 47.30 2.00e-14 70.10
IUUC-Oga-088262 Otolemur garnettii 79.93 0.00e+00 1117.00
IUUC-Oar-089658 Ovis aries 79.96 0.00e+00 1189.00
IUUC-Ptr-091311 Pan troglodytes 80.30 0.00e+00 1132.00
IUUC-Pan-091925 Papio anubis 80.20 0.00e+00 1177.00
IUUC-Psi-093605 Pelodiscus sinensis 65.18 0.00e+00 790.00
IUUC-Pma-094163 Petromyzon marinus 72.81 2.00e-98 351.00
IUUC-Pno-094790 Phaeosphaeria nodorum 30.09 4.00e-25 109.00
IUUC-Ppa-095943 Physcomitrella patens 30.41 1.00e-44 175.00
IUUC-Pfo-096581 Poecilia formosa 69.71 3.00e-134 473.00
IUUC-Pab-098229 Pongo abelii 79.76 0.00e+00 1131.00
IUUC-Pop-099160 Populus trichocarpa 30.67 5.00e-40 159.00
IUUC-Pca-100875 Procavia capensis 74.24 0.00e+00 715.00
IUUC-Ppe-101658 Prunus persica 36.90 3.00e-17 84.30
IUUC-Pva-102343 Pteropus vampyrus 92.34 0.00e+00 960.00
IUUC-Pgr-103275 Puccinia graminis 36.24 5.00e-18 86.70
IUUC-Ptt-104004 Puccinia triticina 40.00 3.00e-10 60.10
IUUC-Pte-104161 Pyrenophora teres 31.99 7.00e-30 125.00
IUUC-Pyt-104576 Pyrenophora triticirepentis 32.41 3.00e-30 126.00
IUUC-Sce-106138 Saccharomyces cerevisiae 30.92 4.00e-38 152.00
IUUC-Sha-107497 Sarcophilus harrisii 69.68 0.00e+00 964.00
IUUC-Sja-107991 Schizosaccharomyces japonicus 32.83 7.00e-44 171.00
IUUC-Spo-108257 Schizosaccharomyces pombe 33.63 1.00e-46 180.00
IUUC-Ssl-108581 Sclerotinia sclerotiorum 29.74 2.00e-37 150.00
IUUC-Smo-109358 Selaginella moellendorffii 29.95 3.00e-34 139.00
IUUC-Sit-109920 Setaria italica 32.80 3.00e-37 150.00
IUUC-Sly-111616 Solanum lycopersicum 38.10 1.00e-26 115.00
IUUC-Stu-112648 Solanum tuberosum 32.37 3.00e-11 63.20
IUUC-Sar-113120 Sorex araneus 73.43 0.00e+00 968.00
IUUC-Sbi-113881 Sorghum bicolor 30.40 4.00e-38 153.00
IUUC-Sre-115127 Sporisorium reilianum 30.96 3.00e-47 182.00
IUUC-Ssc-116147 Sus scrofa 81.40 0.00e+00 1135.00
IUUC-Tgu-117215 Taeniopygia guttata 75.59 0.00e+00 674.00
IUUC-Tru-118525 Takifugu rubripes 64.10 3.00e-133 468.00
IUUC-Tsy-119160 Tarsius syrichta 81.77 0.00e+00 1148.00
IUUC-Tni-119816 Tetraodon nigroviridis 68.98 1.00e-82 299.00
IUUC-Tca-121727 Theobroma cacao 30.56 6.00e-32 132.00
IUUC-Tre-122181 Trichoderma reesei 28.92 2.00e-35 144.00
IUUC-Tvi-122316 Trichoderma virens 28.27 2.00e-35 143.00
IUUC-Tae-125227 Triticum aestivum 30.05 2.00e-27 117.00
IUUC-Tur-126827 Triticum urartu 36.31 2.00e-16 81.30
IUUC-Tme-126984 Tuber melanosporum 30.46 1.00e-44 174.00
IUUC-Tbe-127263 Tupaia belangeri 76.00 0.00e+00 832.00
IUUC-Ttr-128498 Tursiops truncatus 79.11 0.00e+00 1174.00
IUUC-Uma-129457 Ustilago maydis 30.63 4.00e-45 176.00
IUUC-Vda-129986 Verticillium dahliae 28.95 9.00e-35 141.00
IUUC-Vpa-130795 Vicugna pacos 90.85 0.00e+00 796.00
IUUC-Vvi-131146 Vitis vinifera 36.31 7.00e-17 82.80
IUUC-Xtr-132789 Xenopus tropicalis 66.09 0.00e+00 673.00
IUUC-Xma-133011 Xiphophorus maculatus 69.01 1.00e-132 467.00
IUUC-Yli-134516 Yarrowia lipolytica 32.49 9.00e-40 157.00
IUUC-Zma-134699 Zea mays 30.00 1.00e-36 148.00
Created Date 25-Jun-2017

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