iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_PIM	3.90e-23	81.6	5	75

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_PIM

   S: 3    ltvktlkgkefelevseddtveelKekiakesgvppeqqkLIya.GkiLkDdttLselgikdgsvvhlvvk 72
           l+vk l gkef ++++ ++ ++elK+++a++sgvp+ qq+L ++ G+ L+D   L   g++ gs+v+l+v 
   Q: 5    LKVKMLGGKEFLVSMTNSMMLSELKKQVAQKSGVPAFQQRLAHQsGEMLQDGVALIRQGLSSGSTVMLMVE 75
           89*****************************************736888********************86 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MTWNLKVKML GGKEFLVSMT NSMMLSELKK QVAQKSGVPA FQQRLAHQSG EMLQDGVALI 60
RQGLSSGSTV MLMVENCSHP LSILVRNERG RSNVYEVQLT QTVEVLMRQV SQHEQVSQDQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTCAGGAAA AGGAAACCGA AACAGAAACA GCTCTGGAGC CCAGAGACTC CGCCTCTTCA 60
CATCCACAGC TCAGACTTTA AGAGAGCTGA CCCAGTGAGT CTCTCTCTGA CTGTGAGAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

SMART

SM00213--UBQ

Gene Ontology

GO:0005576--C:extracellular region
GO:0031386--F:protein tag
GO:0042742--P:defense response to bacterium
GO:0051607--P:defense response to virus
GO:0032020--P:ISG15-protein conjugation
GO:0019941--P:modification-dependent protein catabolic process
GO:0031397--P:negative regulation of protein ubiquitination
GO:0045071--P:negative regulation of viral genome replication
GO:0030501--P:positive regulation of bone mineralization
GO:0045648--P:positive regulation of erythrocyte differentiation
GO:0032649--P:regulation of interferon-gamma production
GO:0034340--P:response to type I interferon

KEGG

rno:298693

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001878	Ailuropoda melanoleuca	66.89	8.00e-56	209.00
IUUC-Aca-004519	Anolis carolinensis	32.91	4.00e-21	94.00
IUUC-Bta-013171	Bos taurus	63.69	5.00e-51	192.00
IUUC-Cja-019835	Callithrix jacchus	63.69	2.00e-52	197.00
IUUC-Cfa-020065	Canis familiaris	67.74	3.00e-57	213.00
IUUC-Cpo-021861	Cavia porcellus	58.06	1.00e-47	181.00
IUUC-Csa-023867	Chlorocebus sabaeus	65.19	5.00e-51	192.00
IUUC-Dno-029882	Dasypus novemcinctus	60.26	4.00e-50	190.00
IUUC-Dor-030951	Dipodomys ordii	59.33	2.00e-45	174.00
IUUC-Eca-034085	Equus caballus	65.36	1.00e-51	194.00
IUUC-Fca-035436	Felis catus	64.33	5.00e-56	209.00
IUUC-Ggo-045637	Gorilla gorilla	63.29	9.00e-53	199.00
IUUC-Hsa-046999	Homo sapiens	63.92	3.00e-48	184.00
IUUC-Itr-048270	Ictidomys tridecemlineatus	63.87	5.00e-55	206.00
IUUC-Laf-053813	Loxodonta africana	60.39	6.00e-50	189.00
IUUC-Mcc-055557	Macaca mulatta	65.82	1.00e-55	208.00
IUUC-Mmr-060685	Microcebus murinus	66.88	9.00e-56	209.00
IUUC-Mdo-062517	Monodelphis domestica	47.44	3.00e-29	120.00
IUUC-Mmu-064385	Mus musculus	73.89	4.00e-60	223.00
IUUC-Mpu-066848	Mustela putorius furo	64.97	6.00e-56	209.00
IUUC-Ocu-074687	Oryctolagus cuniculus	60.39	2.00e-48	184.00
IUUC-Oga-089098	Otolemur garnettii	62.42	2.00e-50	191.00
IUUC-Oar-089908	Ovis aries	67.52	1.00e-57	214.00
IUUC-Ptr-090653	Pan troglodytes	64.56	2.00e-53	201.00
IUUC-Pan-092485	Papio anubis	66.46	4.00e-56	210.00
IUUC-Pab-098308	Pongo abelii	65.19	2.00e-54	204.00
IUUC-Sha-107193	Sarcophilus harrisii	42.67	9.00e-30	122.00
IUUC-Ssc-115784	Sus scrofa	66.67	2.00e-55	207.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence