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Tag Content
UUCD2 ID IUUC-Eca-033343
UUCD1 version UUC-EqC-00886
Ensembl Protein ID ENSECAP00000005109.1
UniProt Accession F7DJH7; F7DJH7_HORSE
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSECAG00000007003.1 ENSECAT00000007069.1 ENSECAP00000005109.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 5.70e-11 42.1 438 461
E3 activity/RING/RING 5.20e-06 27.0 16 55
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    r+kQ+++D++LA+qLQ+E++++++
   Q: 438 RHKQEEEDRLLALQLQKEVDKEQM 461
    8********************997 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C+iC e + + p++lpC+H+ + C+q +++ + CP Cr
   Q: 16 CPICVEILIE-PVTLPCNHTLCNPCFQST-----VEKASLCCPFCR 55
    **********.9**************544.....5**********8 PP
   

Organism Equus caballus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAGPKDAIPS LSECQCPICV EILIEPVTLP CNHTLCNPCF QSTVEKASLC CPFCRRRVSS 60
WTRYHTRRNS LINMELWEII QKHYPKECKL RASGQESEEI VDDYQPVRLL SKPGELRREY 120
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Protein Fasta Sequence



>IUUC-Eca-033343|E3,RING;UBD,MIU|Equus caballus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTGTAGATGG TCCGGAAATA GGATTGTTTC TCTTTTCGGG TGTTGATGTT GGATCTGCCT 60
TATTAGCATA TTAAAATGGC TGGACCCAAA GACGCCATCC CTTCCTTATC GGAATGCCAG 120
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Nucleotide Fasta Sequence



>IUUC-Eca-033343|E3,RING;UBD,MIU|Equus caballus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 80.11 0.00e+00 749.00
IUUC-Atr-002992 Amborella trichopoda 39.73 3.00e-10 58.90
IUUC-Apl-003963 Anas platyrhynchos 45.36 9.00e-71 260.00
IUUC-Aca-004420 Anolis carolinensis 67.52 8.00e-46 178.00
IUUC-Ath-007019 Arabidopsis thaliana 40.00 6.00e-10 60.10
IUUC-Ame-011521 Astyanax mexicanus 53.45 3.00e-37 149.00
IUUC-Bta-013002 Bos taurus 77.52 0.00e+00 734.00
IUUC-Bol-016180 Brassica oleracea 38.67 4.00e-10 58.50
IUUC-Bra-017905 Brassica rapa 38.67 4.00e-10 58.90
IUUC-Cja-019945 Callithrix jacchus 76.90 0.00e+00 696.00
IUUC-Cfa-020533 Canis familiaris 79.24 0.00e+00 748.00
IUUC-Cpo-021643 Cavia porcellus 61.61 5.00e-144 504.00
IUUC-Csa-023638 Chlorocebus sabaeus 74.41 0.00e+00 703.00
IUUC-Cho-024319 Choloepus hoffmanni 76.17 0.00e+00 681.00
IUUC-Cin-025679 Ciona intestinalis 37.04 1.00e-20 93.60
IUUC-Csv-026052 Ciona savignyi 37.27 2.00e-19 88.60
IUUC-Cgl-026426 Colletotrichum gloeosporioides 32.00 2.00e-10 60.50
IUUC-Dre-028519 Danio rerio 51.93 2.00e-36 147.00
IUUC-Dno-029294 Dasypus novemcinctus 79.57 0.00e+00 744.00
IUUC-Ete-032714 Echinops telfairi 53.80 7.00e-87 314.00
IUUC-Eeu-034633 Erinaceus europaeus 36.41 2.00e-17 82.80
IUUC-Fca-036251 Felis catus 81.23 0.00e+00 790.00
IUUC-Fal-037048 Ficedula albicollis 45.99 2.00e-76 279.00
IUUC-Fox-037926 Fusarium oxysporum 30.69 1.00e-09 56.60
IUUC-Gmo-039400 Gadus morhua 45.22 5.00e-31 125.00
IUUC-Gga-040444 Gallus gallus 42.58 1.00e-70 261.00
IUUC-Gac-041735 Gasterosteus aculeatus 45.81 2.00e-35 141.00
IUUC-Gma-044332 Glycine max 35.42 2.00e-12 66.20
IUUC-Ggo-044940 Gorilla gorilla 72.40 6.00e-135 474.00
IUUC-Hsa-046424 Homo sapiens 77.84 0.00e+00 691.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 76.17 0.00e+00 684.00
IUUC-Kpa-049137 Komagataella pastoris 31.00 1.00e-09 57.40
IUUC-Lch-050649 Latimeria chalumnae 39.20 2.00e-58 219.00
IUUC-Loc-051847 Lepisosteus oculatus 35.85 4.00e-49 188.00
IUUC-Laf-053938 Loxodonta africana 73.43 0.00e+00 747.00
IUUC-Mcc-055360 Macaca mulatta 74.23 0.00e+00 677.00
IUUC-Meu-056684 Macropus eugenii 51.47 7.00e-116 410.00
IUUC-Mtr-058007 Medicago truncatula 37.97 5.00e-12 65.50
IUUC-Mga-059699 Meleagris gallopavo 44.85 3.00e-71 262.00
IUUC-Mmr-060779 Microcebus murinus 79.60 0.00e+00 785.00
IUUC-Mdo-062225 Monodelphis domestica 56.12 9.00e-118 417.00
IUUC-Mmu-064239 Mus musculus 67.69 6.00e-169 587.00
IUUC-Mpu-066141 Mustela putorius furo 81.98 0.00e+00 797.00
IUUC-Mlu-067945 Myotis lucifugus 78.28 0.00e+00 748.00
IUUC-Nle-069769 Nomascus leucogenys 78.38 0.00e+00 706.00
IUUC-Opr-070905 Ochotona princeps 64.80 5.00e-168 584.00
IUUC-Ont-071477 Oreochromis niloticus 52.21 1.00e-33 137.00
IUUC-Oan-073531 Ornithorhynchus anatinus 45.36 4.00e-61 228.00
IUUC-Ocu-073832 Oryctolagus cuniculus 72.15 0.00e+00 662.00
IUUC-Ola-086478 Oryzias latipes 47.66 1.00e-34 138.00
IUUC-Oga-088318 Otolemur garnettii 78.24 0.00e+00 734.00
IUUC-Oar-089647 Ovis aries 76.26 0.00e+00 723.00
IUUC-Ptr-090516 Pan troglodytes 78.38 0.00e+00 713.00
IUUC-Pan-092302 Papio anubis 73.56 0.00e+00 673.00
IUUC-Psi-093604 Pelodiscus sinensis 43.69 1.00e-83 303.00
IUUC-Pfo-096441 Poecilia formosa 50.00 1.00e-33 137.00
IUUC-Pab-097729 Pongo abelii 77.12 0.00e+00 692.00
IUUC-Pop-099737 Populus trichocarpa 34.09 6.00e-10 59.70
IUUC-Pca-100552 Procavia capensis 63.96 6.00e-113 401.00
IUUC-Pva-102780 Pteropus vampyrus 82.34 0.00e+00 800.00
IUUC-Rno-105461 Rattus norvegicus 67.88 2.00e-171 595.00
IUUC-Sha-106809 Sarcophilus harrisii 57.96 8.00e-140 490.00
IUUC-Sja-107830 Schizosaccharomyces japonicus 29.79 9.00e-08 51.20
IUUC-Sly-111317 Solanum lycopersicum 38.00 4.00e-15 75.90
IUUC-Stu-112783 Solanum tuberosum 34.58 4.00e-14 72.40
IUUC-Sar-113579 Sorex araneus 64.44 2.00e-164 572.00
IUUC-Sbi-113834 Sorghum bicolor 37.65 2.00e-11 63.20
IUUC-Tgu-117187 Taeniopygia guttata 61.03 4.00e-47 181.00
IUUC-Tru-118182 Takifugu rubripes 49.19 4.00e-34 139.00
IUUC-Tsy-119217 Tarsius syrichta 58.63 1.00e-63 236.00
IUUC-Tni-120205 Tetraodon nigroviridis 52.46 4.00e-35 141.00
IUUC-Tca-121416 Theobroma cacao 36.59 6.00e-12 64.70
IUUC-Tre-121992 Trichoderma reesei 30.30 7.00e-09 55.10
IUUC-Tvi-122557 Trichoderma virens 29.90 1.00e-06 47.40
IUUC-Tbe-127622 Tupaia belangeri 76.53 0.00e+00 723.00
IUUC-Ttr-128988 Tursiops truncatus 85.02 0.00e+00 808.00
IUUC-Vpa-130302 Vicugna pacos 77.37 1.00e-143 503.00
IUUC-Vvi-131424 Vitis vinifera 35.37 2.00e-10 59.30
IUUC-Xtr-132196 Xenopus tropicalis 44.68 2.00e-68 253.00
Created Date 25-Jun-2017

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