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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Rno-105477
UUCD1 version UUC-RaN-00007
Ensembl Protein ID ENSRNOP00000018488.1
UniProt Accession Q8R4T2; Q920M8; SIAH2_RAT
Genbank Protein ID BAB70754.1; AAL91363.1
Protein Name E3 ubiquitin-protein ligase SIAH2; RING-type E3 ubiquitin transferase SIAH2; Seven in absentia homolog 2
Genbank Nucleotide ID AB067815; AF389477
Gene Name Siah2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000013703.4 ENSRNOT00000018488.2 ENSRNOP00000018488.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACRAID2
Protein-protein Interaction
IIDiRefIndexMentha
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 11786535
Reviewed
Classification
Family Identity E-value Score Source Orthology
E3 activity/RING/RING 87.96 4.00e-153 538.00 IUUC-Hsa-046179
E3 activity/RING/RING 99.69 1.00e-156 549.00 IUUC-Mmu-063206
Organism Rattus norvegicus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Mediates ubiquitination and proteasomal degradation of DYRK2 in response to hypoxia. Promotes monoubiquitination of SNCA (By similarity). Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (POU2AF1, PML, NCOR1), a cell surface receptor (DCC), an antiapoptotic protein (BAG1), and a protein involved in synaptic vesicle function in neurons (SYP). It is thereby involved in apoptosis, tumor suppression, cell cycle, transcription and signaling processes. Has some overlapping function with SIAH1. Triggers the ubiquitin-mediated degradation of TRAF2, whereas SIAH1 does not.
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Mediates ubiquitination and proteasomal degradation of DYRK2 in response to hypoxia. Promotes monoubiquitination of SNCA (By similarity). Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (POU2AF1, PML, NCOR1), a cell surface receptor (DCC), an antiapoptotic protein (BAG1), and a protein involved in synaptic vesicle function in neurons (SYP). It is thereby involved in apoptosis, tumor suppression, cell cycle, transcription and signaling processes. Has some overlapping function with SIAH1. Triggers the ubiquitin-mediated degradation of TRAF2, whereas SIAH1 does not.
Protein Sequence
(Fasta)
MSRPSSTGPS ANKPCSKQPP PPQTPHAPSP AAPPAAATIS AAGPGSSAVP AAAAVISGPG 60
AGGGAGPVSP QHHELTSLFE CPVCFDYVLP PILQCQAGHL VCNQCRQKLS CCPTCRGALT 120
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Protein Fasta Sequence



>IUUC-Rno-105477|E3,RING|Rattus norvegicus
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Nucleotide Sequence
(Fasta)
GGAGGAGGGC ACCGCACGGC CGCGATCCCC GAGAGCGTCG ACCACTCCGG GCGCCGCCGA 60
GAGGATCGGC GCGGTCGCGT CCCCGCCCTC CCGGTGCTGG TCGGGTCCGC GCCCGGTCCC 120
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Nucleotide Fasta Sequence



>IUUC-Rno-105477|E3,RING|Rattus norvegicus
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Sequence Source Ensembl
Keyword

KW-0053--Apoptosis
KW-0131--Cell cycle
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018121--7-in-absentia-prot_TRAF-dom
IPR001370--BIR_rpt
IPR004162--SINA-like
IPR008974--TRAF-like
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR013010--Znf_SIAH

PROSITE

PS50089--ZF_RING_2
PS51081--ZF_SIAH

Pfam

PF03145--Sina

Gene Ontology

GO:0005829--C:cytosol
GO:0005769--C:early endosome
GO:0043005--C:neuron projection
GO:0043025--C:neuronal cell body
GO:0005654--C:nucleoplasm
GO:0031624--F:ubiquitin conjugating enzyme binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006915--P:apoptotic process
GO:0007049--P:cell cycle
GO:0007275--P:multicellular organism development
GO:0090090--P:negative regulation of canonical Wnt signaling pathway
GO:0043154--P:negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:2001237--P:negative regulation of extrinsic apoptotic signaling pathway
GO:0031396--P:regulation of protein ubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG rno:140593
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001409 Ailuropoda melanoleuca 100.00 6.00e-156 543.00
IUUC-Ame-011678 Astyanax mexicanus 92.09 1.00e-141 495.00
IUUC-Bta-012750 Bos taurus 99.61 6.00e-153 533.00
IUUC-Cja-019800 Callithrix jacchus 97.84 2.00e-155 541.00
IUUC-Cfa-020505 Canis familiaris 99.61 7.00e-154 536.00
IUUC-Cpo-021394 Cavia porcellus 90.80 6.00e-157 546.00
IUUC-Csa-023374 Chlorocebus sabaeus 97.84 2.00e-155 541.00
IUUC-Cho-024933 Choloepus hoffmanni 100.00 2.00e-154 537.00
IUUC-Dre-027711 Danio rerio 91.70 2.00e-141 494.00
IUUC-Dno-029260 Dasypus novemcinctus 100.00 2.00e-147 514.00
IUUC-Dor-030489 Dipodomys ordii 96.20 4.00e-107 379.00
IUUC-Ete-032946 Echinops telfairi 94.44 4.00e-158 550.00
IUUC-Eca-033546 Equus caballus 99.61 4.00e-155 540.00
IUUC-Eeu-034861 Erinaceus europaeus 96.11 5.00e-148 516.00
IUUC-Fal-037160 Ficedula albicollis 88.00 4.00e-132 463.00
IUUC-Gmo-039091 Gadus morhua 89.72 2.00e-139 488.00
IUUC-Gga-040252 Gallus gallus 85.49 1.00e-152 531.00
IUUC-Gac-041673 Gasterosteus aculeatus 89.72 7.00e-140 489.00
IUUC-Ggo-044618 Gorilla gorilla 97.84 2.00e-155 541.00
IUUC-Hsa-046179 Homo sapiens 97.84 2.00e-155 541.00
IUUC-Itr-048976 Ictidomys tridecemlineatus 98.44 9.00e-154 535.00
IUUC-Lch-049496 Latimeria chalumnae 82.15 2.00e-153 535.00
IUUC-Loc-052107 Lepisosteus oculatus 92.80 1.00e-141 495.00
IUUC-Laf-054257 Loxodonta africana 99.61 5.00e-153 533.00
IUUC-Mcc-055023 Macaca mulatta 97.84 2.00e-155 541.00
IUUC-Meu-055922 Macropus eugenii 97.24 8.00e-149 519.00
IUUC-Mga-060070 Meleagris gallopavo 96.09 3.00e-147 514.00
IUUC-Mmr-061494 Microcebus murinus 98.15 2.00e-155 541.00
IUUC-Mdo-061971 Monodelphis domestica 98.82 6.00e-153 533.00
IUUC-Mmu-063206 Mus musculus 99.69 6.00e-158 549.00
IUUC-Mpu-066597 Mustela putorius furo 97.84 2.00e-155 541.00
IUUC-Mlu-067199 Myotis lucifugus 99.61 1.00e-153 535.00
IUUC-Nle-069342 Nomascus leucogenys 97.84 2.00e-155 541.00
IUUC-Opr-070341 Ochotona princeps 56.86 3.00e-50 191.00
IUUC-Ont-071906 Oreochromis niloticus 90.12 8.00e-141 493.00
IUUC-Oan-073701 Ornithorhynchus anatinus 53.85 5.00e-50 191.00
IUUC-Ocu-073950 Oryctolagus cuniculus 99.61 6.00e-157 546.00
IUUC-Oga-089154 Otolemur garnettii 97.84 2.00e-155 541.00
IUUC-Oar-089446 Ovis aries 98.85 2.00e-156 544.00
IUUC-Ptr-091088 Pan troglodytes 97.84 2.00e-155 541.00
IUUC-Psi-093079 Pelodiscus sinensis 99.24 1.00e-158 551.00
IUUC-Pfo-097007 Poecilia formosa 85.38 2.00e-133 468.00
IUUC-Pab-098092 Pongo abelii 97.84 2.00e-155 541.00
IUUC-Pca-100328 Procavia capensis 95.68 5.00e-150 523.00
IUUC-Pva-102368 Pteropus vampyrus 100.00 1.00e-63 236.00
IUUC-Sha-107630 Sarcophilus harrisii 98.86 2.00e-158 550.00
IUUC-Ssc-116441 Sus scrofa 97.53 1.00e-154 538.00
IUUC-Tru-118004 Takifugu rubripes 87.35 4.00e-135 473.00
IUUC-Tsy-119548 Tarsius syrichta 89.39 8.00e-67 246.00
IUUC-Tni-120846 Tetraodon nigroviridis 88.93 1.00e-137 481.00
IUUC-Vpa-130799 Vicugna pacos 99.42 2.00e-103 367.00
Created Date 25-Jun-2017

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