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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006739
Ensembl Protein ID AT1G12910.1
UniProt Accession Q9LPV9; O24513; Q8LAQ5; LWD1_ARATH
Genbank Protein ID AAC18912.1; AAF78495.1; AEE28948.1; AAM13100.1; AAM91176.1; AAM65213.1
Protein Name WD repeat-containing protein LWD1; Protein ANTHOCYANIN 11-A; Protein LIGHT-REGULATED WD1; WD repeat-containing protein AN11-A
Genbank Nucleotide ID U94746; AC012187; CP002684; AY093101; AY128776; AY087676
Gene Name LWD1; AN11A; At1g12910; F13K23.16
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G12910 AT1G12910.1 AT1G12910.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
iRefIndexMentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.70e-16 60.6 177 208
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclafsd.tllvsGsdDgtikvWDlrt 32
           H  +v+++a+ + + ++s s Dg+++v+Dlr+
   Q: 177  HDKEVFDIAWGGvGVFASVSADGSVRVFDLRD 208
           8899******55699**************987 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. Required for the expression of APRR9, APRR7, and APRR5. Regulated by APRR9 and APRR7 at the transcriptional level, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491). May function to delay the expression of the morning genes until dawn approaches.
 Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing. Required for the expression of APRR9, APRR7, and APRR5. Regulated by APRR9 and APRR7 at the transcriptional level, indicating the existence of a positive feedback loop within the circadian clock (PubMed:21357491). May function to delay the expression of the morning genes until dawn approaches.
Protein Sequence
(Fasta)
MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI 60
VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL LATSSDFLRL WRIADDHSRV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006739|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TACTCTGTTT TCCTTAAACG GTGTCGTTTT CGTCAATTAT TAAAATAAAC TGGATGACTG 60
GAATATCCAT TTGCTTTTGA GCGAGTGATA GAAGCGGAGG CGATTTTCTA GGGTTTTTGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006739|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0090--Biological rhythms
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0716--Sensory transduction
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005634--C:nucleus
GO:0044212--F:transcription regulatory region DNA binding
GO:0009718--P:anthocyanin-containing compound biosynthetic process
GO:0043153--P:entrainment of circadian clock by photoperiod
GO:0048573--P:photoperiodism, flowering
GO:0048511--P:rhythmic process
KEGG ath:AT1G12910
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002310 Ailuropoda melanoleuca 57.38 4.00e-96 343.00
IUUC-Atr-002576 Amborella trichopoda 85.71 6.00e-180 622.00
IUUC-Apl-003746 Anas platyrhynchos 57.38 4.00e-96 343.00
IUUC-Aca-005293 Anolis carolinensis 58.55 9.00e-115 405.00
IUUC-Aly-006500 Arabidopsis lyrata 99.71 0.00e+00 714.00
IUUC-Ago-007732 Ashbya gossypii 31.16 2.00e-38 152.00
IUUC-Ame-010643 Astyanax mexicanus 53.04 4.00e-98 350.00
IUUC-Bta-013199 Bos taurus 58.55 2.00e-114 404.00
IUUC-Bdi-014374 Brachypodium distachyon 68.81 8.00e-147 512.00
IUUC-Bra-017922 Brassica rapa 98.27 0.00e+00 703.00
IUUC-Cel-018487 Caenorhabditis elegans 52.00 1.00e-101 363.00
IUUC-Cja-018736 Callithrix jacchus 58.55 2.00e-114 404.00
IUUC-Cfa-020446 Canis familiaris 58.55 2.00e-114 404.00
IUUC-Cpo-022424 Cavia porcellus 58.55 2.00e-114 404.00
IUUC-Cre-022609 Chlamydomonas reinhardtii 65.03 2.00e-133 467.00
IUUC-Csa-024013 Chlorocebus sabaeus 57.56 1.00e-98 353.00
IUUC-Cho-024507 Choloepus hoffmanni 57.62 2.00e-95 341.00
IUUC-Cin-025620 Ciona intestinalis 59.42 2.00e-117 414.00
IUUC-Csv-026111 Ciona savignyi 60.00 5.00e-118 416.00
IUUC-Dre-027940 Danio rerio 58.55 1.00e-114 405.00
IUUC-Dno-029520 Dasypus novemcinctus 58.55 2.00e-114 404.00
IUUC-Dor-030262 Dipodomys ordii 62.63 5.00e-33 134.00
IUUC-Dme-031639 Drosophila melanogaster 57.14 5.00e-113 400.00
IUUC-Ete-032605 Echinops telfairi 49.42 1.00e-84 305.00
IUUC-Fca-035942 Felis catus 58.55 2.00e-114 404.00
IUUC-Fal-037544 Ficedula albicollis 58.55 2.00e-114 404.00
IUUC-Gmo-038850 Gadus morhua 58.55 9.00e-115 405.00
IUUC-Gga-040439 Gallus gallus 58.55 2.00e-114 404.00
IUUC-Gac-041776 Gasterosteus aculeatus 58.26 2.00e-114 404.00
IUUC-Gma-043355 Glycine max 92.49 0.00e+00 664.00
IUUC-Ggo-044490 Gorilla gorilla 58.55 2.00e-114 404.00
IUUC-Hsa-046015 Homo sapiens 58.55 2.00e-114 404.00
IUUC-Hvu-047667 Hordeum vulgare 68.72 1.00e-146 512.00
IUUC-Itr-048428 Ictidomys tridecemlineatus 58.55 2.00e-114 404.00
IUUC-Lch-049754 Latimeria chalumnae 58.84 4.00e-115 407.00
IUUC-Lpe-050741 Leersia perrieri 70.21 2.00e-149 521.00
IUUC-Loc-052351 Lepisosteus oculatus 57.93 3.00e-112 397.00
IUUC-Laf-054077 Loxodonta africana 58.55 2.00e-114 404.00
IUUC-Mcc-055728 Macaca mulatta 58.55 2.00e-114 404.00
IUUC-Mtr-057654 Medicago truncatula 90.62 0.00e+00 658.00
IUUC-Mga-059566 Meleagris gallopavo 57.38 4.00e-96 343.00
IUUC-Mmr-060831 Microcebus murinus 58.55 2.00e-114 404.00
IUUC-Mdo-062612 Monodelphis domestica 58.55 2.00e-114 404.00
IUUC-Mmu-063399 Mus musculus 58.55 2.00e-114 404.00
IUUC-Mac-065226 Musa acuminata 77.34 1.00e-154 538.00
IUUC-Mpu-065951 Mustela putorius furo 58.55 2.00e-114 404.00
IUUC-Mlu-067858 Myotis lucifugus 58.67 2.00e-113 401.00
IUUC-Nle-070059 Nomascus leucogenys 58.55 2.00e-114 404.00
IUUC-Opr-070572 Ochotona princeps 58.89 8.00e-115 405.00
IUUC-Ont-071420 Oreochromis niloticus 57.68 1.00e-111 395.00
IUUC-Ocu-074105 Oryctolagus cuniculus 58.55 2.00e-114 404.00
IUUC-Oba-075409 Oryza barthii 70.31 3.00e-148 517.00
IUUC-Obr-076284 Oryza brachyantha 68.59 7.00e-129 452.00
IUUC-Ogl-076984 Oryza glaberrima 70.31 2.00e-148 518.00
IUUC-Ogu-078283 Oryza glumaepatula 70.05 2.00e-148 517.00
IUUC-Olo-081042 Oryza longistaminata 76.65 4.00e-108 383.00
IUUC-Ome-081174 Oryza meridionalis 70.05 2.00e-148 518.00
IUUC-Oni-082033 Oryza nivara 70.05 2.00e-148 518.00
IUUC-Opu-084034 Oryza punctata 70.94 1.00e-149 521.00
IUUC-Oru-084908 Oryza rufipogon 69.71 2.00e-131 462.00
IUUC-Osa-085678 Oryza sativa 70.05 2.00e-148 518.00
IUUC-Ola-086324 Oryzias latipes 58.55 8.00e-115 405.00
IUUC-Olu-087620 Ostreococcus lucimarinus 73.72 6.00e-149 519.00
IUUC-Oga-088446 Otolemur garnettii 58.55 2.00e-114 404.00
IUUC-Oar-090168 Ovis aries 58.55 2.00e-114 404.00
IUUC-Ptr-090691 Pan troglodytes 58.72 1.00e-114 405.00
IUUC-Pan-092772 Papio anubis 58.55 2.00e-114 404.00
IUUC-Psi-093304 Pelodiscus sinensis 59.12 2.00e-89 321.00
IUUC-Pma-094292 Petromyzon marinus 56.91 5.00e-96 343.00
IUUC-Ppa-095734 Physcomitrella patens 79.28 2.00e-161 560.00
IUUC-Pfo-097157 Poecilia formosa 58.55 8.00e-115 405.00
IUUC-Pab-097898 Pongo abelii 57.56 2.00e-98 353.00
IUUC-Pop-099943 Populus trichocarpa 94.51 0.00e+00 679.00
IUUC-Pca-100404 Procavia capensis 58.89 8.00e-115 405.00
IUUC-Ppe-102015 Prunus persica 92.02 0.00e+00 660.00
IUUC-Pva-102938 Pteropus vampyrus 51.91 1.00e-58 219.00
IUUC-Pgr-103490 Puccinia graminis 34.49 5.00e-56 211.00
IUUC-Rno-104961 Rattus norvegicus 58.55 2.00e-114 404.00
IUUC-Sha-107196 Sarcophilus harrisii 47.11 5.00e-91 327.00
IUUC-Smo-109596 Selaginella moellendorffii 76.92 3.00e-151 526.00
IUUC-Sit-110625 Setaria italica 67.56 3.00e-106 377.00
IUUC-Sly-111410 Solanum lycopersicum 90.78 0.00e+00 659.00
IUUC-Stu-112854 Solanum tuberosum 91.64 0.00e+00 664.00
IUUC-Sbi-114474 Sorghum bicolor 67.53 2.00e-144 504.00
IUUC-Ssc-116028 Sus scrofa 58.55 2.00e-114 404.00
IUUC-Tgu-117189 Taeniopygia guttata 58.55 2.00e-114 404.00
IUUC-Tru-117581 Takifugu rubripes 58.55 9.00e-115 405.00
IUUC-Tsy-119425 Tarsius syrichta 45.03 3.00e-64 237.00
IUUC-Tni-120649 Tetraodon nigroviridis 58.26 6.00e-113 399.00
IUUC-Tca-121561 Theobroma cacao 93.64 0.00e+00 675.00
IUUC-Tae-123331 Triticum aestivum 68.81 8.00e-146 509.00
IUUC-Tur-126531 Triticum urartu 70.56 1.00e-148 520.00
IUUC-Tbe-127919 Tupaia belangeri 58.89 8.00e-115 405.00
IUUC-Ttr-129135 Tursiops truncatus 60.44 5.00e-59 220.00
IUUC-Vpa-130486 Vicugna pacos 35.55 4.00e-43 167.00
IUUC-Vvi-131265 Vitis vinifera 93.06 0.00e+00 664.00
IUUC-Xtr-132175 Xenopus tropicalis 58.55 1.00e-114 405.00
IUUC-Xma-134129 Xiphophorus maculatus 58.55 8.00e-115 405.00
Created Date 25-Jun-2017

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