iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-113854

Ensembl Protein ID

Sb02g034230.1

UniProt Accession

C5X9C7; C5X9C7_SORBI

Genbank Protein ID

EER99427.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000761

Gene Name

SORBI_002G312800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb02g034230	Sb02g034230.1	Sb02g034230.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.90e-07	30.7	301	332

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           ++s++++    ++ +l++s++ D  +++WD+ t
   Q: 301  SGSIRSI-VrhPElPLIASCGLDSYLRIWDTNT 332
           5788888.4478899***************765 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MPRTTVVESP GCPPLRALTT DIIGLVKVVE AHTKPAGAAK VVETWGDPDA SRAIVAASLA 60
DRAADPVLAV ARKNGVVELL NPLNGDALAA VKTVGPSPND GGAEGDPLAA LHLFTRQASD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAACTTT TCCTCCTCCC CCTTTCCACC GCGCCGGCGA GCCGAAGCGA CGCGGAGTAA 60
GGATGCCGCG GACCACCGTG GTGGAGAGCC CCGGCTGCCC GCCGCTCCGT GCCCTCACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0030687--C:preribosome, large subunit precursor
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

sbi:SORBI_02g034230

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000787	Aegilops tauschii	79.10	5.00e-179	619.00
IUUC-Aml-001460	Ailuropoda melanoleuca	30.56	4.00e-29	121.00
IUUC-Atr-002657	Amborella trichopoda	56.39	5.00e-116	410.00
IUUC-Aly-006380	Arabidopsis lyrata	52.92	4.00e-110	390.00
IUUC-Ath-007686	Arabidopsis thaliana	53.20	1.00e-110	392.00
IUUC-Ame-011942	Astyanax mexicanus	37.00	1.00e-25	110.00
IUUC-Bta-013382	Bos taurus	34.98	5.00e-29	120.00
IUUC-Bdi-014280	Brachypodium distachyon	72.03	0.00e+00	663.00
IUUC-Bra-017855	Brassica rapa	52.65	1.00e-109	389.00
IUUC-Cja-018933	Callithrix jacchus	35.85	1.00e-27	116.00
IUUC-Cfa-020634	Canis familiaris	35.32	2.00e-30	125.00
IUUC-Cpo-022089	Cavia porcellus	39.08	5.00e-26	110.00
IUUC-Csa-023835	Chlorocebus sabaeus	36.99	2.00e-29	122.00
IUUC-Cho-024385	Choloepus hoffmanni	44.26	8.00e-07	46.20
IUUC-Cin-025691	Ciona intestinalis	31.02	3.00e-23	101.00
IUUC-Dre-028473	Danio rerio	32.78	7.00e-28	117.00
IUUC-Dno-029687	Dasypus novemcinctus	35.82	2.00e-26	112.00
IUUC-Dor-030529	Dipodomys ordii	32.61	2.00e-07	49.30
IUUC-Dme-031982	Drosophila melanogaster	28.16	3.00e-12	65.50
IUUC-Ete-032407	Echinops telfairi	43.33	3.00e-16	78.60
IUUC-Eca-033792	Equus caballus	33.71	2.00e-13	68.90
IUUC-Fca-036584	Felis catus	38.27	6.00e-29	120.00
IUUC-Gmo-039064	Gadus morhua	33.20	5.00e-28	117.00
IUUC-Gac-042170	Gasterosteus aculeatus	35.06	3.00e-24	105.00
IUUC-Gma-044150	Glycine max	54.10	1.00e-122	432.00
IUUC-Ggo-044955	Gorilla gorilla	36.53	2.00e-28	119.00
IUUC-Hsa-046615	Homo sapiens	39.25	3.00e-28	118.00
IUUC-Hvu-047119	Hordeum vulgare	75.23	8.00e-149	519.00
IUUC-Itr-048987	Ictidomys tridecemlineatus	34.68	3.00e-27	115.00
IUUC-Kpa-049188	Komagataella pastoris	25.14	3.00e-15	75.10
IUUC-Lch-050396	Latimeria chalumnae	30.79	9.00e-31	126.00
IUUC-Laf-054015	Loxodonta africana	34.33	5.00e-28	117.00
IUUC-Mcc-055589	Macaca mulatta	36.53	2.00e-28	119.00
IUUC-Meu-056160	Macropus eugenii	36.61	3.00e-13	68.60
IUUC-Mtr-057719	Medicago truncatula	55.40	5.00e-119	420.00
IUUC-Mmr-060801	Microcebus murinus	38.71	3.00e-28	118.00
IUUC-Mdo-062069	Monodelphis domestica	38.86	2.00e-26	112.00
IUUC-Mmu-063487	Mus musculus	38.73	3.00e-26	112.00
IUUC-Mpu-066542	Mustela putorius furo	29.90	9.00e-28	116.00
IUUC-Mlu-067520	Myotis lucifugus	35.82	3.00e-26	112.00
IUUC-Nle-069422	Nomascus leucogenys	36.53	2.00e-28	119.00
IUUC-Opr-070402	Ochotona princeps	27.54	1.00e-13	69.70
IUUC-Ont-072078	Oreochromis niloticus	34.66	2.00e-24	105.00
IUUC-Ocu-073886	Oryctolagus cuniculus	39.66	4.00e-27	114.00
IUUC-Obr-076206	Oryza brachyantha	80.65	4.00e-175	607.00
IUUC-Ogl-077112	Oryza glaberrima	77.78	2.00e-177	613.00
IUUC-Ogu-078172	Oryza glumaepatula	73.44	3.00e-162	563.00
IUUC-Oin-080070	Oryza indica	77.53	7.00e-177	612.00
IUUC-Olo-080534	Oryza longistaminata	74.41	4.00e-141	494.00
IUUC-Ome-081869	Oryza meridionalis	75.86	4.00e-174	603.00
IUUC-Opu-083828	Oryza punctata	80.37	1.00e-175	608.00
IUUC-Oru-084690	Oryza rufipogon	73.68	3.00e-169	587.00
IUUC-Ola-087342	Oryzias latipes	35.12	1.00e-21	96.70
IUUC-Oga-088865	Otolemur garnettii	34.91	2.00e-27	115.00
IUUC-Oar-090030	Ovis aries	39.25	2.00e-28	119.00
IUUC-Pan-092461	Papio anubis	36.53	2.00e-28	119.00
IUUC-Psi-093061	Pelodiscus sinensis	37.71	6.00e-28	117.00
IUUC-Pma-094281	Petromyzon marinus	35.75	8.00e-24	103.00
IUUC-Ppa-095623	Physcomitrella patens	44.63	4.00e-85	307.00
IUUC-Pfo-097074	Poecilia formosa	36.36	2.00e-20	92.40
IUUC-Pab-098290	Pongo abelii	36.53	2.00e-28	119.00
IUUC-Pop-099602	Populus trichocarpa	61.17	8.00e-125	439.00
IUUC-Pca-100383	Procavia capensis	34.03	5.00e-27	114.00
IUUC-Ppe-101867	Prunus persica	59.62	1.00e-124	438.00
IUUC-Pva-103218	Pteropus vampyrus	36.36	2.00e-09	55.80
IUUC-Rno-105494	Rattus norvegicus	36.02	8.00e-28	117.00
IUUC-Sha-107127	Sarcophilus harrisii	35.94	7.00e-28	117.00
IUUC-Sit-110466	Setaria italica	93.21	0.00e+00	697.00
IUUC-Ssc-116144	Sus scrofa	39.08	2.00e-27	115.00
IUUC-Tru-118516	Takifugu rubripes	36.00	4.00e-24	104.00
IUUC-Tni-120527	Tetraodon nigroviridis	33.71	2.00e-24	105.00
IUUC-Tae-123088	Triticum aestivum	80.38	0.00e+00	627.00
IUUC-Tur-126054	Triticum urartu	79.41	4.00e-147	514.00
IUUC-Tbe-127232	Tupaia belangeri	25.78	2.00e-11	62.40
IUUC-Ttr-128529	Tursiops truncatus	38.17	6.00e-27	114.00
IUUC-Vpa-130703	Vicugna pacos	42.06	9.00e-21	93.60
IUUC-Vvi-131680	Vitis vinifera	59.07	2.00e-125	441.00
IUUC-Xtr-132802	Xenopus tropicalis	27.87	5.00e-11	61.20
IUUC-Xma-133396	Xiphophorus maculatus	28.33	1.00e-11	62.80

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence