iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
miRTarBase	TRANSFAC	RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	2.60e-06	27.6	62	148

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgs.eltlkvnpsd.tVaeLKeki.....ekk.lgip.peqqrLiykGki.L..eddktLady.glkdgstihllekksg 75
           v+++v++ldgs e++ + ++++ +V+++K+ +     e++ l ++ +++++ + +G+i L  +++ +L+++ +++d++++++l+++++
   Q: 62   VFCVVEQLDGSlEYDNR-EEHAeFVLVRKDVLfsqlvETAlLALGySHSSAAQAQGIIkLgrWNPLPLSYVtDAPDATVADMLQDVYH 148
           689************99.77777*******55555578888****************96599************************98 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MERRSESPCL RDSPDRRSGS PDVKGPPPVK VARLEQNGSP MGARGRPNGA VAKAVGGLMI 60
PVFCVVEQLD GSLEYDNREE HAEFVLVRKD VLFSQLVETA LLALGYSHSS AAQAQGIIKL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTTAAAAG TATTATTTAA AATATAACTT GCTGTAGTGA CTAGAAGTGT TTGAAATAAT 60
TTGCTTTAGT TGAAATGAAG TTAACAAAAC CGAATTGGGA AAACAGAAGA GGCCTTCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0371--Homeobox
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR003350--CUT_dom
IPR032355--CUTL
IPR009057--Homeobox-like
IPR001356--Homeobox_dom
IPR010982--Lambda_DNA-bd_dom
IPR032392--ULD

PROSITE

PS51042--CUT
PS50071--HOMEOBOX_2

Pfam

PF02376--CUT
PF16557--CUTL
PF00046--Homeobox
PF16534--ULD

SMART

SM01109--CUT
SM00389--HOX

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0005634--C:nucleus
GO:0005667--C:transcription factor complex
GO:0003682--F:chromatin binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0043565--F:sequence-specific DNA binding
GO:0001077--F:transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0051216--P:cartilage development
GO:0071310--P:cellular response to organic substance
GO:0006338--P:chromatin remodeling
GO:0021902--P:commitment of neuronal cell to specific neuron type in forebrain
GO:0009880--P:embryonic pattern specification
GO:0048704--P:embryonic skeletal system morphogenesis
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0001764--P:neuron migration
GO:0002076--P:osteoblast development
GO:0060021--P:palate development
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

KEGG

rno:501145

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001646	Ailuropoda melanoleuca	99.70	0.00e+00	1189.00
IUUC-Apl-004052	Anas platyrhynchos	94.24	0.00e+00	1139.00
IUUC-Aca-004787	Anolis carolinensis	91.22	0.00e+00	1232.00
IUUC-Bta-013408	Bos taurus	99.56	0.00e+00	1204.00
IUUC-Cja-019389	Callithrix jacchus	98.91	0.00e+00	1258.00
IUUC-Cfa-020265	Canis familiaris	99.85	0.00e+00	1209.00
IUUC-Cpo-022536	Cavia porcellus	93.89	0.00e+00	1043.00
IUUC-Csa-023562	Chlorocebus sabaeus	98.91	0.00e+00	1258.00
IUUC-Cho-024887	Choloepus hoffmanni	98.64	0.00e+00	1256.00
IUUC-Dno-029724	Dasypus novemcinctus	98.91	0.00e+00	1227.00
IUUC-Dor-030304	Dipodomys ordii	97.19	0.00e+00	726.00
IUUC-Ete-032494	Echinops telfairi	98.31	2.00e-126	446.00
IUUC-Eca-034263	Equus caballus	98.48	0.00e+00	1229.00
IUUC-Eeu-035070	Erinaceus europaeus	85.81	0.00e+00	1075.00
IUUC-Fca-035798	Felis catus	99.27	0.00e+00	1220.00
IUUC-Fal-037543	Ficedula albicollis	94.07	0.00e+00	1135.00
IUUC-Ggo-045271	Gorilla gorilla	98.91	0.00e+00	1258.00
IUUC-Hsa-046324	Homo sapiens	98.91	0.00e+00	1258.00
IUUC-Laf-053934	Loxodonta africana	98.64	0.00e+00	1256.00
IUUC-Mcc-054634	Macaca mulatta	99.05	0.00e+00	1259.00
IUUC-Meu-056505	Macropus eugenii	98.22	7.00e-134	470.00
IUUC-Mga-060057	Meleagris gallopavo	93.50	0.00e+00	1127.00
IUUC-Mmr-061381	Microcebus murinus	99.11	0.00e+00	1108.00
IUUC-Mdo-061840	Monodelphis domestica	97.41	0.00e+00	1283.00
IUUC-Mmu-064308	Mus musculus	99.32	0.00e+00	1263.00
IUUC-Mpu-066080	Mustela putorius furo	99.85	0.00e+00	1226.00
IUUC-Mlu-066936	Myotis lucifugus	96.59	0.00e+00	1217.00
IUUC-Nle-069956	Nomascus leucogenys	99.05	0.00e+00	1259.00
IUUC-Ocu-073904	Oryctolagus cuniculus	98.50	0.00e+00	1227.00
IUUC-Oga-088311	Otolemur garnettii	98.62	0.00e+00	1230.00
IUUC-Oar-089530	Ovis aries	99.71	0.00e+00	1207.00
IUUC-Ptr-090832	Pan troglodytes	98.91	0.00e+00	1258.00
IUUC-Pan-091847	Papio anubis	98.91	0.00e+00	1258.00
IUUC-Psi-093659	Pelodiscus sinensis	94.82	0.00e+00	1273.00
IUUC-Pab-098649	Pongo abelii	98.91	0.00e+00	1258.00
IUUC-Pca-100908	Procavia capensis	97.96	0.00e+00	1203.00
IUUC-Pva-102867	Pteropus vampyrus	100.00	0.00e+00	1229.00
IUUC-Sha-106557	Sarcophilus harrisii	97.00	0.00e+00	1295.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence