iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-116043

Ensembl Protein ID

ENSSSCP00000023079.1

UniProt Accession

I3LG86; I3LG86_PIG

Genbank Protein ID

JAA53565.1

Protein Name

Ring finger protein 13

Genbank Nucleotide ID

CU915458

Gene Name

RNF13

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000027459.1	ENSSSCT00000022374.1	ENSSSCP00000023079.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.80e-09	36.9	240	282

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl++++dg  +++lpC H++h +C+  w     +++++ +CP+C+
   Q: 240  CAICLDEYEDGdkLRILPCSHAYHCKCVDPW-----LTKTKKTCPVCK 282
           ********66666******************.....899********7 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MLLSIGMLML SATQVYTILT VQLFAFLNLL PVEADVLAYN FENASQTFDD LPARFGYRLP 60
AEGLKGFLIN SKPENACEPI VPPPLKDNSS GTFIVLIRRL DCNFDEKVLN AQRAGYKAAI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTGACGAAG GTTAAAAATC ACAGGGTTTA ACTTTTGCTG AGTCTCGGGG TATCGCGTGC 60
CAGGCCGAGC GCTGACGTCA GCACGGCTCC TACTCATGCA CCCGGGGACT ACGGTTTAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR003137--PA_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF02225--PA
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0016021--C:integral component of membrane
GO:0031902--C:late endosome membrane
GO:0005765--C:lysosomal membrane
GO:0005654--C:nucleoplasm
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0051865--P:protein autoubiquitination

KEGG

ssc:100621829

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000889	Aegilops tauschii	28.63	7.00e-19	88.60
IUUC-Aml-001909	Ailuropoda melanoleuca	97.90	0.00e+00	646.00
IUUC-Atr-003055	Amborella trichopoda	31.45	2.00e-32	133.00
IUUC-Apl-004022	Anas platyrhynchos	91.34	2.00e-174	604.00
IUUC-Aca-004641	Anolis carolinensis	88.02	7.00e-170	589.00
IUUC-Aly-006519	Arabidopsis lyrata	32.68	5.00e-33	134.00
IUUC-Ani-009337	Aspergillus nidulans	46.30	4.00e-13	67.80
IUUC-Ame-010635	Astyanax mexicanus	71.94	4.00e-139	487.00
IUUC-Bta-012593	Bos taurus	98.16	0.00e+00	695.00
IUUC-Bci-013936	Botrytis cinerea	35.14	6.00e-13	68.60
IUUC-Bdi-014479	Brachypodium distachyon	32.02	2.00e-28	119.00
IUUC-Bol-015396	Brassica oleracea	34.14	2.00e-23	102.00
IUUC-Bra-017689	Brassica rapa	33.10	4.00e-34	138.00
IUUC-Cel-018181	Caenorhabditis elegans	31.28	5.00e-29	121.00
IUUC-Cja-019353	Callithrix jacchus	96.85	0.00e+00	639.00
IUUC-Cfa-020234	Canis familiaris	97.90	0.00e+00	646.00
IUUC-Cpo-021602	Cavia porcellus	95.04	6.00e-158	549.00
IUUC-Cre-022983	Chlamydomonas reinhardtii	37.93	1.00e-10	61.20
IUUC-Csa-023201	Chlorocebus sabaeus	97.38	0.00e+00	641.00
IUUC-Cho-024954	Choloepus hoffmanni	81.89	3.00e-148	517.00
IUUC-Cin-025554	Ciona intestinalis	43.15	3.00e-61	228.00
IUUC-Dre-028744	Danio rerio	77.47	1.00e-135	475.00
IUUC-Dno-029675	Dasypus novemcinctus	97.11	0.00e+00	638.00
IUUC-Dor-030791	Dipodomys ordii	78.74	5.00e-136	476.00
IUUC-Dse-031406	Dothistroma septosporum	43.33	1.00e-12	68.20
IUUC-Dme-031765	Drosophila melanogaster	40.07	1.00e-51	197.00
IUUC-Ete-032577	Echinops telfairi	86.48	2.00e-139	488.00
IUUC-Eca-034148	Equus caballus	96.85	0.00e+00	639.00
IUUC-Eeu-034552	Erinaceus europaeus	95.54	2.00e-178	617.00
IUUC-Fca-036021	Felis catus	97.90	0.00e+00	644.00
IUUC-Fal-037621	Ficedula albicollis	90.29	6.00e-171	593.00
IUUC-Gmo-039485	Gadus morhua	77.61	4.00e-133	467.00
IUUC-Gga-041166	Gallus gallus	91.08	3.00e-174	603.00
IUUC-Gac-042124	Gasterosteus aculeatus	75.62	3.00e-128	451.00
IUUC-Ggo-045344	Gorilla gorilla	97.64	0.00e+00	643.00
IUUC-Hsa-045960	Homo sapiens	97.64	0.00e+00	643.00
IUUC-Hvu-047136	Hordeum vulgare	34.13	3.00e-29	122.00
IUUC-Itr-048327	Ictidomys tridecemlineatus	95.28	0.00e+00	631.00
IUUC-Lch-050635	Latimeria chalumnae	82.19	2.00e-134	471.00
IUUC-Lpe-051192	Leersia perrieri	34.78	3.00e-30	126.00
IUUC-Loc-052869	Lepisosteus oculatus	78.15	4.00e-139	487.00
IUUC-Laf-054477	Loxodonta africana	95.54	0.00e+00	634.00
IUUC-Mcc-055232	Macaca mulatta	97.38	0.00e+00	641.00
IUUC-Meu-056237	Macropus eugenii	83.09	1.00e-116	411.00
IUUC-Mpo-057522	Magnaporthe poae	44.44	3.00e-13	69.70
IUUC-Mtr-058129	Medicago truncatula	32.42	5.00e-29	122.00
IUUC-Mla-059171	Melampsora laricipopulina	38.57	1.00e-10	61.20
IUUC-Mga-059780	Meleagris gallopavo	91.60	2.00e-174	604.00
IUUC-Mvi-060468	Microbotryum violaceum	46.00	4.00e-12	66.60
IUUC-Mmr-061384	Microcebus murinus	97.03	1.00e-178	618.00
IUUC-Mdo-062781	Monodelphis domestica	92.93	3.00e-179	620.00
IUUC-Mmu-063727	Mus musculus	93.96	5.00e-173	599.00
IUUC-Mac-065216	Musa acuminata	32.57	5.00e-29	122.00
IUUC-Mpu-066497	Mustela putorius furo	98.43	0.00e+00	647.00
IUUC-Mlu-067654	Myotis lucifugus	96.14	4.00e-115	406.00
IUUC-Nle-069368	Nomascus leucogenys	97.64	0.00e+00	643.00
IUUC-Opr-070934	Ochotona princeps	67.98	5.00e-110	390.00
IUUC-Ont-071868	Oreochromis niloticus	75.24	1.00e-127	449.00
IUUC-Oan-072733	Ornithorhynchus anatinus	88.93	2.00e-105	374.00
IUUC-Ocu-074083	Oryctolagus cuniculus	96.85	0.00e+00	638.00
IUUC-Oba-075841	Oryza barthii	33.70	1.00e-28	120.00
IUUC-Obr-076703	Oryza brachyantha	35.97	2.00e-31	129.00
IUUC-Ogl-077861	Oryza glaberrima	35.97	2.00e-31	130.00
IUUC-Ogu-078205	Oryza glumaepatula	35.18	2.00e-29	123.00
IUUC-Oin-080138	Oryza indica	32.67	1.00e-28	120.00
IUUC-Olo-081024	Oryza longistaminata	35.57	2.00e-30	127.00
IUUC-Ome-081844	Oryza meridionalis	35.97	2.00e-31	129.00
IUUC-Oni-082382	Oryza nivara	33.20	4.00e-31	129.00
IUUC-Opu-083162	Oryza punctata	34.78	1.00e-31	130.00
IUUC-Oru-085122	Oryza rufipogon	33.23	6.00e-29	121.00
IUUC-Osa-086175	Oryza sativa	35.97	1.00e-31	130.00
IUUC-Ola-086440	Oryzias latipes	74.01	3.00e-115	407.00
IUUC-Oga-088291	Otolemur garnettii	92.18	1.00e-167	582.00
IUUC-Oar-089911	Ovis aries	97.90	0.00e+00	694.00
IUUC-Ptr-091166	Pan troglodytes	97.64	0.00e+00	643.00
IUUC-Pan-092154	Papio anubis	97.38	0.00e+00	641.00
IUUC-Psi-093062	Pelodiscus sinensis	91.60	1.00e-169	588.00
IUUC-Pma-094545	Petromyzon marinus	73.21	7.00e-26	107.00
IUUC-Ppa-095928	Physcomitrella patens	34.85	1.00e-31	130.00
IUUC-Pfo-097232	Poecilia formosa	77.12	1.00e-131	462.00
IUUC-Pab-097909	Pongo abelii	97.38	0.00e+00	644.00
IUUC-Pop-099688	Populus trichocarpa	31.70	2.00e-23	102.00
IUUC-Pca-100724	Procavia capensis	79.95	4.00e-139	487.00
IUUC-Ppe-101605	Prunus persica	31.05	1.00e-28	119.00
IUUC-Pva-102624	Pteropus vampyrus	91.60	7.00e-166	576.00
IUUC-Pgr-103420	Puccinia graminis	55.32	2.00e-12	68.20
IUUC-Ptt-103943	Puccinia triticina	44.44	6.00e-11	62.00
IUUC-Rno-105109	Rattus norvegicus	93.44	2.00e-165	575.00
IUUC-Sha-107563	Sarcophilus harrisii	92.67	6.00e-174	603.00
IUUC-Spo-108083	Schizosaccharomyces pombe	26.75	3.00e-15	75.50
IUUC-Ssl-108601	Sclerotinia sclerotiorum	41.07	6.00e-13	68.20
IUUC-Smo-109274	Selaginella moellendorffii	35.85	3.00e-33	135.00
IUUC-Sit-110628	Setaria italica	33.33	2.00e-31	130.00
IUUC-Sly-110842	Solanum lycopersicum	29.01	9.00e-29	120.00
IUUC-Stu-112408	Solanum tuberosum	29.20	4.00e-27	115.00
IUUC-Sbi-114522	Sorghum bicolor	31.83	1.00e-28	120.00
IUUC-Sre-114989	Sporisorium reilianum	43.14	9.00e-13	69.30
IUUC-Tgu-116908	Taeniopygia guttata	90.31	1.00e-171	595.00
IUUC-Tru-118219	Takifugu rubripes	75.47	5.00e-131	460.00
IUUC-Tsy-119333	Tarsius syrichta	98.16	0.00e+00	635.00
IUUC-Tni-120332	Tetraodon nigroviridis	71.49	3.00e-88	317.00
IUUC-Tca-121333	Theobroma cacao	33.08	2.00e-28	119.00
IUUC-Tvi-122495	Trichoderma virens	41.67	2.00e-12	67.00
IUUC-Tae-125320	Triticum aestivum	31.16	8.00e-30	123.00
IUUC-Tur-126455	Triticum urartu	33.60	1.00e-27	117.00
IUUC-Tbe-127859	Tupaia belangeri	85.79	2.00e-166	578.00
IUUC-Ttr-129219	Tursiops truncatus	88.45	1.00e-159	555.00
IUUC-Vda-129899	Verticillium dahliae	43.40	6.00e-13	68.60
IUUC-Vpa-130314	Vicugna pacos	94.75	6.00e-175	606.00
IUUC-Vvi-131355	Vitis vinifera	33.08	2.00e-29	123.00
IUUC-Xtr-132114	Xenopus tropicalis	77.22	3.00e-132	464.00
IUUC-Xma-133474	Xiphophorus maculatus	77.12	9.00e-132	462.00
IUUC-Yli-134442	Yarrowia lipolytica	44.68	3.00e-12	65.90

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence