iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Smo-109445

Ensembl Protein ID

EFJ33384

UniProt Accession

D8R418; D8R418_SELML

Genbank Protein ID

EFJ33384.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL377571

Gene Name

SELMODRAFT_84610

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_84610	EFJ33384	EFJ33384

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-27	95.7	555	592
UBD/Beta-Prp	5.90e-49	167.5	94	356

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHtd++t++ f  d + l+s++ D t++vWD+   ++l
   Q: 555  GHTDRITDFTFsEDgKWLLSSAMDATVRVWDVVAAKQL 592
           8**********955699**************9877765 PP

UBD/Beta-Prp

   S: 14   tcvkf.spdksllatgsrdgtikvwdvttgkl......lrslsgheae.......vtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           +++k+  +++ +++++ + g + vwd+   ++      +        +       vt++   +++    + g eD+ +++w+++++k+vh +kg ++ vl+
   Q: 94   SKIKYlLEFGHFILSSDTEGHVCVWDTGILSTkgdgkpI--------AelhfgrgVTCLMHPQTYLdKVLFGFEDGRLQLWNIKSRKMVHEFKGWNSPVLT 186
           233444456777777777777777777664444444444........0555555588886666553599******************************** PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgs 199
           + +sp  d++ +G  d  i+v +++ ++ + ++   ++g v+ +++  dg   l++G+  +++ +Wdl+ +kl +    +h++ v sl f  n + l+s s
   Q: 187  CVSSPALDVVGIGCGDGKIHVHNIRYDETIATFTHTTRGGVTALSFRTDGhAFLAAGGSSGAISIWDLEKKKLQTVINDAHDSEVASLHFLANEPVLMSNS 287
           *******************************88888999************************************************************** PP
   S: 200  ldgtvklwdlq....tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn 264
           +d+++k+w +       + +r   gh+++++++r   ++  ++sg++D+  r++ + +++  + l++ n
   Q: 288  KDNSLKMWIFDsldgDARLLRYRSGHSAPPTCIRYYGDGRCILSGGQDRAFRLFSTIQDQQSRELSQGN 356
           ********999898877789999******************************9666666666666654 PP

Organism

Selaginella moellendorffii

Protein Sequence
(Fasta)

MGIFEAFRAI GYISDGVPFA VQRSGVETLV TVSVGKAWQR FNCSKLLLVF VGPQLEKSIR 60
ALACYEGFTF AASGKNVVVF DRAHQIAVWK AHSSKIKYLL EFGHFILSSD TEGHVCVWDT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGCATTT TCGAAGCCTT CCGGGCGATC GGCTACATCA GTGATGGCGT CCCATTCGCA 60
GTGCAGCGCA GCGGCGTTGA GACGCTCGTC ACGGTGAGCG TCGGCAAGGC GTGGCAGCGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR024977--Apc4_WD40_dom
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing

KEGG

smo:SELMODRAFT_84610

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001096	Aegilops tauschii	52.80	0.00e+00	949.00
IUUC-Apl-003505	Anas platyrhynchos	35.06	2.00e-138	486.00
IUUC-Cho-024518	Choloepus hoffmanni	30.89	2.00e-97	349.00
IUUC-Cne-026859	Cryptococcus neoformans	34.25	7.00e-135	474.00
IUUC-Cme-027173	Cyanidioschyzon merolae	28.83	3.00e-86	312.00
IUUC-Dno-029439	Dasypus novemcinctus	36.21	3.00e-151	528.00
IUUC-Dor-030329	Dipodomys ordii	34.45	3.00e-68	252.00
IUUC-Dse-031511	Dothistroma septosporum	28.41	1.00e-82	300.00
IUUC-Dme-031694	Drosophila melanogaster	34.09	2.00e-130	459.00
IUUC-Fca-036064	Felis catus	36.49	3.00e-153	535.00
IUUC-Hvu-047352	Hordeum vulgare	53.68	0.00e+00	874.00
IUUC-Mvi-060334	Microbotryum violaceum	31.62	2.00e-104	372.00
IUUC-Opr-070437	Ochotona princeps	43.66	1.00e-47	184.00
IUUC-Ont-071574	Oreochromis niloticus	36.67	1.00e-149	523.00
IUUC-Oba-075407	Oryza barthii	50.16	0.00e+00	823.00
IUUC-Ogu-077995	Oryza glumaepatula	49.41	0.00e+00	823.00
IUUC-Opu-084028	Oryza punctata	52.16	0.00e+00	832.00
IUUC-Psi-093019	Pelodiscus sinensis	34.90	3.00e-145	508.00
IUUC-Ppa-095720	Physcomitrella patens	54.75	0.00e+00	992.00
IUUC-Pfo-097034	Poecilia formosa	36.34	3.00e-141	495.00
IUUC-Ssl-108618	Sclerotinia sclerotiorum	30.19	5.00e-105	375.00
IUUC-Sit-110051	Setaria italica	53.70	0.00e+00	990.00
IUUC-Sar-113348	Sorex araneus	35.34	6.00e-110	391.00
IUUC-Sre-114946	Sporisorium reilianum	30.56	2.00e-78	287.00
IUUC-Tru-118232	Takifugu rubripes	34.75	6.00e-137	481.00
IUUC-Tni-120378	Tetraodon nigroviridis	37.43	2.00e-145	509.00
IUUC-Tvi-122385	Trichoderma virens	28.65	5.00e-99	355.00
IUUC-Tur-126490	Triticum urartu	47.45	0.00e+00	764.00
IUUC-Tbe-127981	Tupaia belangeri	40.58	2.00e-139	488.00
IUUC-Vda-129760	Verticillium dahliae	29.59	1.00e-101	363.00
IUUC-Zma-135808	Zea mays	53.81	0.00e+00	987.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence