iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-109558

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

GL377719

Gene Name

SELMODRAFT_431447

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_431447	EFJ05569	EFJ05569

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-32	111.4	153	193
UBD/Beta-Prp	5.00e-51	174.3	23	267

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtik..vWDlrtgvllk 37
           gH  +v+cl+f +d + +vsG+ D+t+k  +WDl+ g+l++
   Q: 153  GHCRGVNCLKFsPDgRWVVSGGEDKTVKvqLWDLTAGKLIH 193
           89**********99999********************9876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           +h+s+++c+k+  + +++l+tg++d+++  w + ++++     sl gh+++v +v+f+  ++  v g+  ++ik+wdl+  k+v+tl+gh ++ ++++f+p
   Q: 23   AHSSQVNCLKIgRKTSRVLVTGGDDHKVNMWAIGKPNAiliACSLAGHSSPVESVTFDAAESHVVAGAASGAIKLWDLEEAKIVRTLTGHRSNCTAVDFHP 123
           7999*******999***********************98866789******************************************************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvr..lWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgt 203
            g++++sGs d+ +++wd++ + c++ t +gh + vnc++++pdg+ +vsG+ D+tv+  lWdl  gkl+++++  h+d++ sl+f++  + l++gs+d+t
   Q: 124  FGEFFASGSLDSNLKIWDIRRKGCIH-TYRGHCRGVNCLKFSPDGRWVVSGGEDKTVKvqLWDLTAGKLIHDFKY-HDDQILSLDFHPHEFLLATGSDDKT 222
           **************************.****************************986336************97.************************* PP
   S: 204  vklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
            k++dl+t e v +    ++ v+s+ f+p++  l+++  +g ++++
   Q: 223  AKFYDLETFELVGSSGPEDSGVRSMIFTPDGRTLLCALREG-LKVY 267
           ****************************9999999886444.4444 PP

Organism

Selaginella moellendorffii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MKRAYKLQLL VDLVGGNPEE FVAHSSQVNC LKIGRKTSRV LVTGGDDHKV NMWAIGKPNA 60
ILIACSLAGH SSPVESVTFD AAESHVVAGA ASGAIKLWDL EEAKIVRTLT GHRSNCTAVD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGCGCG CTTACAAATT ACGTGAGTTT CTTCGCATTT GATTTTTTTT TCAGAGCTTT 60
TGGTTGATCT TGTTGGTGGC AATCCAGAGG AGTTTGTTGC GCATTCTTCC CAGGTGAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

smo:SELMODRAFT_431447

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cin-025156	Ciona intestinalis	30.97	2.00e-93	335.00
IUUC-Psi-093830	Pelodiscus sinensis	34.05	4.00e-101	361.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence