iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076153

Ensembl Protein ID

OB05G15080.1

UniProt Accession

J3M4I4; J3M4I4_ORYBR

Protein Name

Coatomer subunit alpha

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB05G15080	OB05G15080.1	OB05G15080.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-28	96.3	69	99
UBD/Beta-Prp	1.60e-58	198.9	6	245

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+  v c +f +  +l+vs+s D t++vWD
   Q: 69   GHNHYVMCASFhPKeDLVVSASLDQTVRVWD 99
           8***********777**************** PP

UBD/Beta-Prp

   S: 71   seDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl. 166
           ++D+ ikvw+++t  c+ tl+gh d++++++f+ +  ++vs+s+d+tir+w++++++c+  +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+ 
   Q: 6    GDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVA-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIg 101
           589*********************************************************.************************************ PP
   S: 167  ..........................ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnde 235
                                       + + + l+g h++ v++ sf+++ + +vsg++d++vklw +  ++   v+tl+gh +nv++v f+ +++
   Q: 102  alrkktvspaddilrltqmntdlfggVDAVVKYVLEG-HDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAweVDTLRGHMNNVSCVMFHAKQD 197
           *************977777777776444444444466.********************************777668********************* PP
   S: 236  rlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgs 284
           ++vs s+D+siriWd ++++ ++t+ +++++++  a+ +++ n l++g 
   Q: 198  IIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAA-HPEMNLLAAGH 245
           *************************************.88877775554 PP

Organism

Oryza brachyantha

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MSNTRGDDYK IKVWNYKTHR CLFTLHGHLD YIRTVQFHHE YPWIVSASDD QTIRIWNWQS 60
RTCVAVLTGH NHYVMCASFH PKEDLVVSAS LDQTVRVWDI GALRKKTVSP ADDILRLTQM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCAACA CTCGAGGTTG ATACGTGGTT TACGATTAGA TCGCGTTTGG TGTATAGTGG 60
TGGTTGTGCA ACTGATCCTT GTCGGTCGGA TCTGGTGTTG GTTCTAGAGT GCATCTTAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ome-081668	Oryza meridionalis	87.98	0.00e+00	1854.00
IUUC-Pno-094839	Phaeosphaeria nodorum	43.74	0.00e+00	934.00
IUUC-Ptt-103978	Puccinia triticina	43.76	0.00e+00	920.00
IUUC-Tgu-117109	Taeniopygia guttata	44.55	2.00e-108	385.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence