iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vvi-131001

Ensembl Protein ID

VIT_06s0004g06550.t01

UniProt Accession

A5BX89; A5BX89_VITVI

Genbank Protein ID

CAN61895.1; CBI15959.3

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

AM474513; FN594951

Gene Name

DDB2; VIT_06s0004g06550; VITISV_028792

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_06s0004g06550	VIT_06s0004g06550.t01	VIT_06s0004g06550.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-19	68.3	170	201

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDl 30
           H+ +vtcl+f   ++++l+sG   g++ vWD+
   Q: 170  HSRRVTCLEFhptNNNILLSGDKKGQLGVWDY 201
           999********8544****************6 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MAPRTRRGSF PRVVIERDTE SEKSSSSEEE EDPEPEVQEE EESEELAEVE NGENVEEGLG 60
SKKKERVPIT IALTKVCKVC KRKGHEAGFK GATYIDCPMK PCFLCKMPGH TTMTCPHKVA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTCCGC GGACAAGAAG AGGGTCTTTT CCTAGAGTTG TAATTGAGAG AGATACGGAG 60
TCTGAAAAAA GTTCATCATC AGAAGAAGAG GAGGACCCAG AACCAGAAGT GCAAGAAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR033312--DDB2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001878--Znf_CCHC

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006281--P:DNA repair

KEGG

vvi:100250121

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000470	Aegilops tauschii	70.14	0.00e+00	692.00
IUUC-Aml-002203	Ailuropoda melanoleuca	29.48	6.00e-34	137.00
IUUC-Atr-002957	Amborella trichopoda	74.89	0.00e+00	743.00
IUUC-Apl-003832	Anas platyrhynchos	35.29	5.00e-44	171.00
IUUC-Aca-004358	Anolis carolinensis	35.73	2.00e-45	176.00
IUUC-Aly-006296	Arabidopsis lyrata	76.32	0.00e+00	723.00
IUUC-Ath-007115	Arabidopsis thaliana	74.50	0.00e+00	737.00
IUUC-Ame-010817	Astyanax mexicanus	32.82	4.00e-43	168.00
IUUC-Bta-012914	Bos taurus	31.00	3.00e-38	152.00
IUUC-Bdi-014261	Brachypodium distachyon	71.82	0.00e+00	708.00
IUUC-Bol-015317	Brassica oleracea	78.94	0.00e+00	723.00
IUUC-Bra-016848	Brassica rapa	78.29	0.00e+00	720.00
IUUC-Cja-018967	Callithrix jacchus	29.79	6.00e-36	144.00
IUUC-Cfa-021238	Canis familiaris	29.54	3.00e-30	125.00
IUUC-Cpo-022063	Cavia porcellus	29.13	3.00e-34	138.00
IUUC-Csa-023382	Chlorocebus sabaeus	29.79	1.00e-35	143.00
IUUC-Cin-025651	Ciona intestinalis	25.94	2.00e-22	99.80
IUUC-Cne-027093	Cryptococcus neoformans	25.00	1.00e-09	57.40
IUUC-Dre-028732	Danio rerio	30.75	3.00e-37	148.00
IUUC-Dor-030461	Dipodomys ordii	31.86	7.00e-28	117.00
IUUC-Ete-033038	Echinops telfairi	30.30	5.00e-34	137.00
IUUC-Eca-033772	Equus caballus	29.85	4.00e-35	141.00
IUUC-Fca-036095	Felis catus	28.88	1.00e-30	126.00
IUUC-Gmo-039683	Gadus morhua	31.98	1.00e-46	179.00
IUUC-Gga-040530	Gallus gallus	35.78	1.00e-44	172.00
IUUC-Gac-041517	Gasterosteus aculeatus	31.52	4.00e-37	147.00
IUUC-Gma-043378	Glycine max	74.76	0.00e+00	801.00
IUUC-Ggo-045364	Gorilla gorilla	30.40	7.00e-37	147.00
IUUC-Hsa-046354	Homo sapiens	30.40	8.00e-37	147.00
IUUC-Hvu-047151	Hordeum vulgare	71.78	9.00e-132	462.00
IUUC-Itr-048304	Ictidomys tridecemlineatus	30.37	7.00e-36	144.00
IUUC-Lpe-051256	Leersia perrieri	68.25	0.00e+00	679.00
IUUC-Loc-052398	Lepisosteus oculatus	32.26	9.00e-41	160.00
IUUC-Laf-053562	Loxodonta africana	31.31	5.00e-36	144.00
IUUC-Mcc-055197	Macaca mulatta	30.50	2.00e-31	129.00
IUUC-Meu-056151	Macropus eugenii	32.39	8.00e-34	136.00
IUUC-Mtr-057940	Medicago truncatula	74.51	0.00e+00	774.00
IUUC-Mga-059923	Meleagris gallopavo	35.86	1.00e-46	179.00
IUUC-Mmr-061465	Microcebus murinus	30.22	3.00e-30	125.00
IUUC-Mdo-063063	Monodelphis domestica	33.33	3.00e-42	165.00
IUUC-Mmu-064294	Mus musculus	30.41	2.00e-37	148.00
IUUC-Mac-065598	Musa acuminata	72.36	0.00e+00	717.00
IUUC-Mpu-066831	Mustela putorius furo	29.85	1.00e-30	126.00
IUUC-Mlu-067222	Myotis lucifugus	30.46	7.00e-35	140.00
IUUC-Nle-069581	Nomascus leucogenys	30.40	8.00e-37	147.00
IUUC-Opr-070644	Ochotona princeps	30.45	5.00e-36	144.00
IUUC-Ont-072605	Oreochromis niloticus	30.26	6.00e-37	147.00
IUUC-Oan-072973	Ornithorhynchus anatinus	35.19	1.00e-44	172.00
IUUC-Ocu-074615	Oryctolagus cuniculus	29.79	1.00e-34	139.00
IUUC-Oba-075283	Oryza barthii	68.44	0.00e+00	652.00
IUUC-Obr-076605	Oryza brachyantha	70.09	0.00e+00	701.00
IUUC-Ogl-077512	Oryza glaberrima	69.46	0.00e+00	669.00
IUUC-Ogu-078329	Oryza glumaepatula	68.66	0.00e+00	653.00
IUUC-Oin-079980	Oryza indica	68.66	0.00e+00	652.00
IUUC-Olo-080516	Oryza longistaminata	72.99	0.00e+00	635.00
IUUC-Ome-081415	Oryza meridionalis	68.87	0.00e+00	667.00
IUUC-Oni-082985	Oryza nivara	68.66	0.00e+00	652.00
IUUC-Opu-084159	Oryza punctata	73.36	0.00e+00	692.00
IUUC-Oru-085137	Oryza rufipogon	69.76	0.00e+00	673.00
IUUC-Osa-085614	Oryza sativa	69.76	0.00e+00	673.00
IUUC-Ola-087044	Oryzias latipes	29.49	4.00e-40	158.00
IUUC-Oga-088274	Otolemur garnettii	31.00	4.00e-36	144.00
IUUC-Oar-089826	Ovis aries	31.00	3.00e-38	151.00
IUUC-Ptr-091631	Pan troglodytes	30.40	8.00e-37	147.00
IUUC-Pan-092535	Papio anubis	29.79	2.00e-36	145.00
IUUC-Psi-093815	Pelodiscus sinensis	34.41	6.00e-42	164.00
IUUC-Pma-094474	Petromyzon marinus	31.21	5.00e-37	147.00
IUUC-Ppa-095414	Physcomitrella patens	60.45	4.00e-173	600.00
IUUC-Pfo-096559	Poecilia formosa	31.17	6.00e-40	157.00
IUUC-Pab-098528	Pongo abelii	30.40	8.00e-37	147.00
IUUC-Pop-100064	Populus trichocarpa	75.45	0.00e+00	825.00
IUUC-Pca-100803	Procavia capensis	30.40	1.00e-35	142.00
IUUC-Ppe-101966	Prunus persica	76.01	0.00e+00	805.00
IUUC-Pva-103213	Pteropus vampyrus	30.40	9.00e-36	143.00
IUUC-Rno-105087	Rattus norvegicus	30.70	4.00e-37	148.00
IUUC-Sha-107466	Sarcophilus harrisii	34.99	1.00e-44	172.00
IUUC-Smo-108958	Selaginella moellendorffii	58.68	2.00e-169	588.00
IUUC-Sit-109968	Setaria italica	71.98	0.00e+00	667.00
IUUC-Sly-111495	Solanum lycopersicum	75.10	0.00e+00	756.00
IUUC-Sar-113272	Sorex araneus	29.43	4.00e-33	134.00
IUUC-Sbi-114706	Sorghum bicolor	67.20	1.00e-177	615.00
IUUC-Ssc-115437	Sus scrofa	30.40	6.00e-33	134.00
IUUC-Tgu-116602	Taeniopygia guttata	33.33	1.00e-44	173.00
IUUC-Tru-118698	Takifugu rubripes	32.75	8.00e-36	143.00
IUUC-Tsy-119027	Tarsius syrichta	30.31	1.00e-29	123.00
IUUC-Tni-119787	Tetraodon nigroviridis	30.29	1.00e-43	169.00
IUUC-Tca-121447	Theobroma cacao	76.03	0.00e+00	798.00
IUUC-Tae-124613	Triticum aestivum	70.58	0.00e+00	710.00
IUUC-Tur-126724	Triticum urartu	71.98	0.00e+00	709.00
IUUC-Tbe-127680	Tupaia belangeri	29.02	1.00e-26	113.00
IUUC-Xtr-132266	Xenopus tropicalis	32.53	1.00e-45	176.00
IUUC-Xma-133034	Xiphophorus maculatus	28.46	4.00e-36	144.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence