iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tru-118530

Ensembl Protein ID

ENSTRUP00000017715.1

UniProt Accession

H2SZ77; H2SZ77_TAKRU

Protein Name

Uncharacterized protein

Gene Name

chd4b; chd4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTRUG00000007202.1	ENSTRUT00000017787.1	ENSTRUP00000017713.1
ENSTRUG00000007202.1	ENSTRUT00000017788.1	ENSTRUP00000017714.1
ENSTRUG00000007202.1	ENSTRUT00000017789.1	ENSTRUP00000017715.1
ENSTRUG00000007202.1	ENSTRUT00000017790.1	ENSTRUP00000017716.1
ENSTRUG00000007202.1	ENSTRUT00000017791.1	ENSTRUP00000017717.1
ENSTRUG00000007202.1	ENSTRUT00000017792.1	ENSTRUP00000017718.1
ENSTRUG00000007202.1	ENSTRUT00000017793.1	ENSTRUP00000017719.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.00e-16	62.1	434	477

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           +C vC++gge    l++C+ C + +H +Cl+++  +e pn e wiCp+C+
   Q: 434  FCRVCKDGGE----LLCCDTCPSSYHIHCLNPP-LPEIPNGE-WICPRCK 477
           8*********....*******************.*******8.******6 PP

Organism

Takifugu rubripes

Protein Sequence
(Fasta)

EDDLDDALSE VEEVPKSKKK KKAKKSSRES RSSKRQRPIR EDIMCCRYKR DEFPVSSPEH 60
LIGSEAADRD PDEGAMRSES EGSDYAPGKK KKKRSSSAKD KKKSASAEKG SSSASKSKRK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCACCCCCTC CCTTCCTGGA CACCCCCGGT CCATTCTCCA GCCCGGTCCC ACGTCATTTT 60
CCCTCCTCCC TCGCCGACCG AGGAGCAAGG TTTAGGGGGG GATTAATTCG ATCAACAAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004774	Anolis carolinensis	79.75	0.00e+00	2352.00
IUUC-Ont-072279	Oreochromis niloticus	89.16	0.00e+00	2889.00
IUUC-Ola-087154	Oryzias latipes	82.76	0.00e+00	2800.00
IUUC-Pfo-096727	Poecilia formosa	86.61	0.00e+00	2819.00
IUUC-Tgu-117484	Taeniopygia guttata	79.54	0.00e+00	2357.00
IUUC-Tni-120764	Tetraodon nigroviridis	92.38	0.00e+00	2947.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence