iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099530

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

CM000340

Gene Name

POPTR_0004s23120g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0004s23120	POPTR_0004s23120.1	POPTR_0004s23120.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-12	48.3	203	241

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH++ v +++   s+  ++sGs Dgt+++W++ t++++k
   Q: 203  GHKGAVMSISTeaSGQWIASGSSDGTVRLWEVETCRCIK 241
           79999999998877789*******************986 PP

Organism

Populus trichocarpa

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MLKGKAPHAD FDPYVPYVDW FKWEDAKHPL SNAPEPKSRF IPSKWEAKKV LGLVRAIRKG 60
YIKFDKPKEE PRFYMLWGDD ASSSEKTGHL SYIPAPKPNL PGHEESYNPS LEYIPTQEEI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCGCAAGAT TTATGATGAG TACAATGATG AGGAAGTAGA GCTTACAAAA GATGAAACCA 60
AACTTGTTCG TAGAATGCTC AAAGGAAAAG CTCCACATGC TGACTTTGAT CCATATGTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

pop:POPTR_0004s23120g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001507	Ailuropoda melanoleuca	43.25	1.00e-122	433.00
IUUC-Ago-007958	Ashbya gossypii	42.61	2.00e-126	446.00
IUUC-Acl-008344	Aspergillus clavatus	43.41	1.00e-109	390.00
IUUC-Afl-008616	Aspergillus flavus	42.71	6.00e-112	397.00
IUUC-Afu-009083	Aspergillus fumigatus	43.31	1.00e-108	387.00
IUUC-Ang-009796	Aspergillus niger	42.91	3.00e-110	392.00
IUUC-Aor-010015	Aspergillus oryzae	42.71	7.00e-112	397.00
IUUC-Ate-010537	Aspergillus terreus	42.61	3.00e-114	405.00
IUUC-Ame-011767	Astyanax mexicanus	48.31	5.00e-68	250.00
IUUC-Bci-013820	Botrytis cinerea	42.86	8.00e-111	394.00
IUUC-Cpo-021796	Cavia porcellus	45.84	2.00e-132	466.00
IUUC-Csa-023440	Chlorocebus sabaeus	44.73	1.00e-135	476.00
IUUC-Csv-026352	Ciona savignyi	44.04	7.00e-124	437.00
IUUC-Dre-028658	Danio rerio	48.15	1.00e-140	493.00
IUUC-Dno-028883	Dasypus novemcinctus	46.03	8.00e-138	483.00
IUUC-Dor-031031	Dipodomys ordii	45.10	1.00e-136	479.00
IUUC-Eeu-035310	Erinaceus europaeus	41.92	9.00e-96	343.00
IUUC-Fal-037438	Ficedula albicollis	45.08	3.00e-129	454.00
IUUC-Gmo-039114	Gadus morhua	47.87	8.00e-126	443.00
IUUC-Gga-040631	Gallus gallus	49.56	1.00e-92	332.00
IUUC-Gac-042582	Gasterosteus aculeatus	46.52	3.00e-127	448.00
IUUC-Hsa-046319	Homo sapiens	44.55	2.00e-135	475.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	46.03	6.00e-136	477.00
IUUC-Kpa-049221	Komagataella pastoris	40.81	1.00e-114	407.00
IUUC-Lch-049640	Latimeria chalumnae	48.80	1.00e-144	506.00
IUUC-Mcc-055471	Macaca mulatta	44.73	1.00e-135	476.00
IUUC-Meu-056190	Macropus eugenii	45.10	6.00e-132	464.00
IUUC-Mga-059645	Meleagris gallopavo	44.72	1.00e-55	208.00
IUUC-Mmr-061674	Microcebus murinus	45.40	3.00e-129	455.00
IUUC-Mdo-062973	Monodelphis domestica	44.83	1.00e-137	483.00
IUUC-Mmu-064180	Mus musculus	45.29	9.00e-137	480.00
IUUC-Mpu-066406	Mustela putorius furo	46.42	7.00e-137	480.00
IUUC-Mlu-067795	Myotis lucifugus	45.84	5.00e-127	447.00
IUUC-Nfi-068516	Neosartorya fischeri	43.31	2.00e-102	366.00
IUUC-Opr-071084	Ochotona princeps	43.43	5.00e-62	231.00
IUUC-Ont-071614	Oreochromis niloticus	46.32	1.00e-140	493.00
IUUC-Ome-081716	Oryza meridionalis	52.70	5.00e-147	514.00
IUUC-Ola-087361	Oryzias latipes	48.71	3.00e-142	498.00
IUUC-Oga-088015	Otolemur garnettii	45.10	3.00e-135	475.00
IUUC-Oar-090058	Ovis aries	52.10	4.00e-47	181.00
IUUC-Pfo-096682	Poecilia formosa	48.16	5.00e-143	501.00
IUUC-Pab-097939	Pongo abelii	44.98	8.00e-136	476.00
IUUC-Pca-100333	Procavia capensis	45.10	2.00e-136	479.00
IUUC-Rno-105248	Rattus norvegicus	46.03	1.00e-136	479.00
IUUC-Spo-108071	Schizosaccharomyces pombe	42.88	3.00e-118	418.00
IUUC-Sar-113123	Sorex araneus	44.62	8.00e-71	259.00
IUUC-Tru-117685	Takifugu rubripes	48.35	3.00e-143	501.00
IUUC-Tni-119982	Tetraodon nigroviridis	47.44	3.00e-135	475.00
IUUC-Tre-122229	Trichoderma reesei	42.91	2.00e-114	405.00
IUUC-Tvi-122576	Trichoderma virens	41.53	3.00e-114	405.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence