iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.30e-11	42.5	2476	2508

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           H d vtcla+ ++  +l+sGs+D t++vW+l +
   Q: 2476 HLDVVTCLALdTCgIYLISGSRDTTCMVWRLLQ 2508
           99********6443449*************865 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MLSCYRRLRP LDLEQPVQQK DLGYLQQWLK AFVGVFEKTI SLSSLEPRRP EEAGAEVPLL 60
PLDALHVLAE QLDQDNLEQA LLLLKLFIIL CRNLENVEAG WGQVLVPRVL ALLTGLMAEL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCAGTTTTCT CCCGGAGAGC TTTTAGTCGT TCTTTCCGTC GCAGCGCCTC TTCCTCGAGG 60
CGGCCCACAC CGGCAGGAGC AGCCGCCATC TTTTCAGAGG CCCCCCTCCT TTTCGCTCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000409--BEACH_dom
IPR013320--ConA-like_dom
IPR031570--DUF4704
IPR023362--PH-BEACH_dom
IPR011993--PH_dom-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50197--BEACH
PS51783--PH_BEACH
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF02138--Beach
PF15787--DUF4704
PF14844--PH_BEACH
PF00400--WD40

SMART

SM01026--Beach
SM00320--WD40

Gene Ontology

GO:0012505--C:endomembrane system
GO:0005783--C:endoplasmic reticulum
GO:0030220--P:platelet formation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001282	Ailuropoda melanoleuca	86.66	0.00e+00	4437.00
IUUC-Atr-002854	Amborella trichopoda	35.16	8.00e-131	462.00
IUUC-Apl-004183	Anas platyrhynchos	63.73	0.00e+00	2590.00
IUUC-Aly-006298	Arabidopsis lyrata	34.07	9.00e-127	449.00
IUUC-Ame-010605	Astyanax mexicanus	67.32	0.00e+00	1402.00
IUUC-Bra-017429	Brassica rapa	34.79	2.00e-133	472.00
IUUC-Cfa-020738	Canis familiaris	86.91	0.00e+00	3455.00
IUUC-Cpo-022242	Cavia porcellus	88.51	0.00e+00	2341.00
IUUC-Csa-023466	Chlorocebus sabaeus	87.14	0.00e+00	4368.00
IUUC-Dre-028627	Danio rerio	53.65	0.00e+00	2627.00
IUUC-Dno-029597	Dasypus novemcinctus	81.89	0.00e+00	3692.00
IUUC-Dme-031593	Drosophila melanogaster	42.30	0.00e+00	981.00
IUUC-Ete-032532	Echinops telfairi	84.42	0.00e+00	1454.00
IUUC-Eca-033286	Equus caballus	88.47	0.00e+00	4363.00
IUUC-Eeu-035290	Erinaceus europaeus	79.86	4.00e-173	603.00
IUUC-Fca-035638	Felis catus	88.14	0.00e+00	4453.00
IUUC-Fal-037533	Ficedula albicollis	61.59	0.00e+00	2994.00
IUUC-Gmo-039339	Gadus morhua	54.06	0.00e+00	2590.00
IUUC-Gga-040180	Gallus gallus	63.86	0.00e+00	2680.00
IUUC-Gac-041466	Gasterosteus aculeatus	54.45	0.00e+00	2661.00
IUUC-Gma-042851	Glycine max	35.17	2.00e-135	477.00
IUUC-Ggo-045191	Gorilla gorilla	90.75	0.00e+00	1626.00
IUUC-Hsa-046607	Homo sapiens	88.24	0.00e+00	4452.00
IUUC-Itr-048531	Ictidomys tridecemlineatus	88.40	0.00e+00	4208.00
IUUC-Lch-050380	Latimeria chalumnae	58.78	0.00e+00	2912.00
IUUC-Loc-052386	Lepisosteus oculatus	65.19	0.00e+00	1746.00
IUUC-Laf-053913	Loxodonta africana	83.55	0.00e+00	4107.00
IUUC-Mcc-055769	Macaca mulatta	88.16	0.00e+00	4454.00
IUUC-Meu-056286	Macropus eugenii	77.53	0.00e+00	2050.00
IUUC-Mtr-057650	Medicago truncatula	33.70	5.00e-134	473.00
IUUC-Mmr-061713	Microcebus murinus	86.34	0.00e+00	4276.00
IUUC-Mdo-062048	Monodelphis domestica	70.19	0.00e+00	3607.00
IUUC-Mmu-063585	Mus musculus	93.13	0.00e+00	4732.00
IUUC-Mac-065578	Musa acuminata	33.40	2.00e-137	484.00
IUUC-Mpu-066234	Mustela putorius furo	87.67	0.00e+00	4413.00
IUUC-Nle-069979	Nomascus leucogenys	85.21	0.00e+00	4200.00
IUUC-Opr-070275	Ochotona princeps	85.38	0.00e+00	2011.00
IUUC-Ont-072584	Oreochromis niloticus	54.67	0.00e+00	2675.00
IUUC-Ocu-074927	Oryctolagus cuniculus	88.70	0.00e+00	4398.00
IUUC-Opu-083624	Oryza punctata	32.13	3.00e-128	454.00
IUUC-Ola-086673	Oryzias latipes	54.39	0.00e+00	2667.00
IUUC-Oga-089117	Otolemur garnettii	87.58	0.00e+00	4326.00
IUUC-Oar-089873	Ovis aries	83.26	0.00e+00	3960.00
IUUC-Ptr-091015	Pan troglodytes	88.59	0.00e+00	4425.00
IUUC-Pfo-096854	Poecilia formosa	55.00	0.00e+00	2623.00
IUUC-Pab-098213	Pongo abelii	90.12	0.00e+00	2355.00
IUUC-Pop-099812	Populus trichocarpa	34.06	3.00e-126	446.00
IUUC-Pca-100386	Procavia capensis	87.70	0.00e+00	2315.00
IUUC-Pva-102854	Pteropus vampyrus	86.60	0.00e+00	1984.00
IUUC-Sha-107194	Sarcophilus harrisii	70.20	0.00e+00	3523.00
IUUC-Sly-111319	Solanum lycopersicum	38.76	5.00e-133	469.00
IUUC-Ssc-115876	Sus scrofa	89.32	0.00e+00	640.00
IUUC-Tru-118404	Takifugu rubripes	55.04	0.00e+00	2637.00
IUUC-Tni-120641	Tetraodon nigroviridis	53.98	0.00e+00	2609.00
IUUC-Tca-121575	Theobroma cacao	35.02	1.00e-125	446.00
IUUC-Ttr-128451	Tursiops truncatus	89.39	0.00e+00	2315.00
IUUC-Vvi-131542	Vitis vinifera	37.56	2.00e-135	478.00
IUUC-Xtr-132038	Xenopus tropicalis	59.71	0.00e+00	3146.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence