iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Tru-117685

UUCD1 version

UUC-TaR-00015

Ensembl Protein ID

ENSTRUP00000000597.1

UniProt Accession

H2RKD4; H2RKD4_TAKRU

Protein Name

Ribosome biogenesis protein BOP1; Block of proliferation 1 protein

Gene Name

bop1; BOP1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTRUG00000000273.1	ENSTRUT00000000600.1	ENSTRUP00000000597.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-15	56.2	419	458

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH++ v++++  ++   l+sGsdDg++k W++ + +++k+
   Q: 419  GHSGLVRSISVsPSgQWLASGSDDGSVKFWEVCSARCVKT 458
           8**********966699******************99985 PP

Organism

Takifugu rubripes

Functional Description
(View)

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MKKDGQKTAK KRHKIEDQED QEEIFNFSQK PSEADEEEDD DLSDSNDSVY SGLEDSGSES 60
DDDDDDDDKE EEEQGSDAES KLDEQVRLSL YLSTVVAIIF LYSIINVLHY PQGEEEEEEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CACGTGTGTC CGCTGTGATG GAAGCAGGCA CCAGCCGAAG CATTGCCAAC ATCAGAATTA 60
AGGAAGATAT GAAGAAAGAC GGGCAGAAAA CTGCAAAAAA GAGGCACAAA ATAGAGGATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	43.27	1.00e-123	437.00
IUUC-Aml-001507	Ailuropoda melanoleuca	66.98	0.00e+00	840.00
IUUC-Atr-003141	Amborella trichopoda	42.09	5.00e-87	315.00
IUUC-Apl-003545	Anas platyrhynchos	64.99	0.00e+00	757.00
IUUC-Aly-005649	Arabidopsis lyrata	47.90	1.00e-161	563.00
IUUC-Ath-007625	Arabidopsis thaliana	48.14	1.00e-159	556.00
IUUC-Ago-007958	Ashbya gossypii	43.81	2.00e-164	572.00
IUUC-Acl-008344	Aspergillus clavatus	44.09	1.00e-145	510.00
IUUC-Afl-008616	Aspergillus flavus	43.74	1.00e-147	517.00
IUUC-Afu-009083	Aspergillus fumigatus	44.46	3.00e-142	499.00
IUUC-Ani-009365	Aspergillus nidulans	43.74	4.00e-148	518.00
IUUC-Ang-009796	Aspergillus niger	42.99	1.00e-143	503.00
IUUC-Aor-010015	Aspergillus oryzae	43.74	1.00e-147	516.00
IUUC-Ate-010537	Aspergillus terreus	44.38	6.00e-151	528.00
IUUC-Ame-011767	Astyanax mexicanus	73.78	4.00e-122	430.00
IUUC-Bgr-012286	Blumeria graminis	45.02	2.00e-155	543.00
IUUC-Bta-013569	Bos taurus	68.34	0.00e+00	867.00
IUUC-Bci-013820	Botrytis cinerea	44.20	2.00e-149	522.00
IUUC-Bdi-014895	Brachypodium distachyon	46.45	4.00e-155	541.00
IUUC-Bol-016099	Brassica oleracea	47.10	3.00e-159	555.00
IUUC-Bra-017174	Brassica rapa	47.10	1.00e-159	557.00
IUUC-Cel-018201	Caenorhabditis elegans	48.25	5.00e-158	551.00
IUUC-Cja-019009	Callithrix jacchus	61.29	0.00e+00	775.00
IUUC-Cfa-020173	Canis familiaris	63.56	0.00e+00	815.00
IUUC-Cpo-021796	Cavia porcellus	69.42	0.00e+00	867.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	47.33	1.00e-158	553.00
IUUC-Csa-023440	Chlorocebus sabaeus	69.58	0.00e+00	905.00
IUUC-Cin-025782	Ciona intestinalis	58.74	0.00e+00	785.00
IUUC-Csv-026352	Ciona savignyi	58.49	0.00e+00	761.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	40.72	3.00e-120	426.00
IUUC-Cne-027004	Cryptococcus neoformans	45.75	9.00e-172	597.00
IUUC-Cme-027242	Cyanidioschyzon merolae	37.06	2.00e-116	412.00
IUUC-Dre-028658	Danio rerio	76.42	0.00e+00	1019.00
IUUC-Dno-028883	Dasypus novemcinctus	67.92	0.00e+00	875.00
IUUC-Dor-031031	Dipodomys ordii	67.40	0.00e+00	895.00
IUUC-Dse-031443	Dothistroma septosporum	41.48	9.00e-149	520.00
IUUC-Dme-031786	Drosophila melanogaster	53.76	0.00e+00	720.00
IUUC-Eca-033677	Equus caballus	69.63	0.00e+00	880.00
IUUC-Eeu-035310	Erinaceus europaeus	65.21	0.00e+00	707.00
IUUC-Fca-035888	Felis catus	66.72	0.00e+00	865.00
IUUC-Fal-037438	Ficedula albicollis	63.67	0.00e+00	690.00
IUUC-Fox-037973	Fusarium oxysporum	45.27	3.00e-163	568.00
IUUC-Fso-038187	Fusarium solani	45.43	4.00e-163	568.00
IUUC-Gmo-039114	Gadus morhua	71.77	0.00e+00	912.00
IUUC-Ggr-039746	Gaeumannomyces graminis	44.36	2.00e-161	563.00
IUUC-Gga-040631	Gallus gallus	68.33	9.00e-146	509.00
IUUC-Gac-042582	Gasterosteus aculeatus	84.44	0.00e+00	1088.00
IUUC-Gma-044215	Glycine max	45.50	6.00e-148	518.00
IUUC-Ggo-045587	Gorilla gorilla	69.84	0.00e+00	908.00
IUUC-Hsa-046319	Homo sapiens	69.90	0.00e+00	907.00
IUUC-Hvu-047526	Hordeum vulgare	45.88	6.00e-148	517.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	68.77	0.00e+00	879.00
IUUC-Kpa-049221	Komagataella pastoris	43.29	2.00e-156	546.00
IUUC-Lch-049640	Latimeria chalumnae	73.23	0.00e+00	979.00
IUUC-Lpe-051135	Leersia perrieri	42.46	2.00e-133	469.00
IUUC-Loc-051930	Lepisosteus oculatus	75.44	0.00e+00	989.00
IUUC-Lma-053290	Leptosphaeria maculans	44.75	4.00e-146	511.00
IUUC-Laf-053903	Loxodonta africana	62.94	0.00e+00	766.00
IUUC-Mcc-055471	Macaca mulatta	69.42	0.00e+00	904.00
IUUC-Meu-056190	Macropus eugenii	68.87	0.00e+00	875.00
IUUC-Mor-057135	Magnaporthe oryzae	44.05	2.00e-153	536.00
IUUC-Mpo-057475	Magnaporthe poae	43.59	3.00e-150	525.00
IUUC-Mtr-058689	Medicago truncatula	41.46	6.00e-132	464.00
IUUC-Mla-059149	Melampsora laricipopulina	45.37	1.00e-165	576.00
IUUC-Mga-059645	Meleagris gallopavo	60.16	1.00e-89	322.00
IUUC-Mvi-060485	Microbotryum violaceum	45.33	9.00e-152	531.00
IUUC-Mmr-061674	Microcebus murinus	68.44	0.00e+00	877.00
IUUC-Mdo-062973	Monodelphis domestica	69.79	0.00e+00	905.00
IUUC-Mmu-064180	Mus musculus	69.90	0.00e+00	888.00
IUUC-Mac-064535	Musa acuminata	43.22	2.00e-95	343.00
IUUC-Mpu-066406	Mustela putorius furo	68.61	0.00e+00	892.00
IUUC-Mlu-067795	Myotis lucifugus	68.77	0.00e+00	847.00
IUUC-Nfi-068516	Neosartorya fischeri	44.24	8.00e-135	474.00
IUUC-Ncr-068767	Neurospora crassa	46.05	1.00e-145	510.00
IUUC-Opr-071084	Ochotona princeps	65.25	5.00e-109	387.00
IUUC-Ont-071614	Oreochromis niloticus	87.22	0.00e+00	1158.00
IUUC-Oba-075980	Oryza barthii	42.63	4.00e-134	471.00
IUUC-Obr-076799	Oryza brachyantha	45.32	4.00e-147	514.00
IUUC-Ogl-077134	Oryza glaberrima	45.00	3.00e-142	498.00
IUUC-Ogu-078655	Oryza glumaepatula	43.39	3.00e-137	482.00
IUUC-Oin-079654	Oryza indica	45.00	4.00e-142	498.00
IUUC-Olo-080706	Oryza longistaminata	42.63	3.00e-133	468.00
IUUC-Ome-081716	Oryza meridionalis	44.94	4.00e-78	286.00
IUUC-Oni-082508	Oryza nivara	43.06	5.00e-134	471.00
IUUC-Opu-083707	Oryza punctata	42.63	3.00e-132	465.00
IUUC-Oru-084453	Oryza rufipogon	42.63	3.00e-133	468.00
IUUC-Osa-085811	Oryza sativa	45.00	3.00e-142	498.00
IUUC-Ola-087361	Oryzias latipes	84.81	0.00e+00	1141.00
IUUC-Oga-088015	Otolemur garnettii	68.77	0.00e+00	902.00
IUUC-Oar-090058	Ovis aries	42.09	4.00e-74	272.00
IUUC-Ptr-090631	Pan troglodytes	65.47	2.00e-114	405.00
IUUC-Pan-092306	Papio anubis	69.79	0.00e+00	905.00
IUUC-Pma-094622	Petromyzon marinus	67.79	0.00e+00	913.00
IUUC-Pno-094794	Phaeosphaeria nodorum	40.53	4.00e-134	471.00
IUUC-Ppa-095528	Physcomitrella patens	44.67	1.00e-99	357.00
IUUC-Pfo-096682	Poecilia formosa	86.80	0.00e+00	1171.00
IUUC-Pab-097939	Pongo abelii	68.90	0.00e+00	802.00
IUUC-Pop-099530	Populus trichocarpa	48.35	2.00e-143	502.00
IUUC-Pca-100333	Procavia capensis	68.17	0.00e+00	876.00
IUUC-Ppe-102078	Prunus persica	44.12	5.00e-149	521.00
IUUC-Pgr-103525	Puccinia graminis	44.83	1.00e-152	533.00
IUUC-Ptt-103929	Puccinia triticina	44.57	3.00e-149	523.00
IUUC-Pte-104029	Pyrenophora teres	43.50	1.00e-154	540.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	43.57	6.00e-155	541.00
IUUC-Rno-105248	Rattus norvegicus	70.23	0.00e+00	889.00
IUUC-Sce-106381	Saccharomyces cerevisiae	41.13	3.00e-157	549.00
IUUC-Sha-106519	Sarcophilus harrisii	69.54	0.00e+00	905.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	42.59	4.00e-142	498.00
IUUC-Spo-108071	Schizosaccharomyces pombe	42.68	4.00e-141	495.00
IUUC-Smo-109604	Selaginella moellendorffii	47.57	1.00e-157	550.00
IUUC-Sit-110551	Setaria italica	46.45	2.00e-149	522.00
IUUC-Sly-110970	Solanum lycopersicum	46.65	1.00e-82	300.00
IUUC-Stu-112593	Solanum tuberosum	45.37	3.00e-154	538.00
IUUC-Sar-113123	Sorex araneus	63.21	2.00e-109	388.00
IUUC-Sbi-113945	Sorghum bicolor	45.65	7.00e-150	524.00
IUUC-Sre-115188	Sporisorium reilianum	44.08	1.00e-156	546.00
IUUC-Ssc-115352	Sus scrofa	68.87	0.00e+00	886.00
IUUC-Tni-119982	Tetraodon nigroviridis	90.45	0.00e+00	1172.00
IUUC-Tca-121664	Theobroma cacao	46.35	2.00e-158	552.00
IUUC-Tre-122229	Trichoderma reesei	43.71	3.00e-142	498.00
IUUC-Tvi-122576	Trichoderma virens	44.51	2.00e-148	519.00
IUUC-Tae-124110	Triticum aestivum	45.47	4.00e-138	485.00
IUUC-Tur-126781	Triticum urartu	43.10	2.00e-119	423.00
IUUC-Tme-127080	Tuber melanosporum	47.64	3.00e-178	618.00
IUUC-Ttr-128514	Tursiops truncatus	67.20	3.00e-174	605.00
IUUC-Uma-129556	Ustilago maydis	42.56	4.00e-149	521.00
IUUC-Vda-129715	Verticillium dahliae	43.65	2.00e-152	532.00
IUUC-Vvi-131211	Vitis vinifera	45.17	2.00e-145	509.00
IUUC-Xma-133883	Xiphophorus maculatus	86.76	0.00e+00	1129.00
IUUC-Yli-134438	Yarrowia lipolytica	43.44	8.00e-145	507.00
IUUC-Zma-135341	Zea mays	42.33	5.00e-86	311.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence