iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vvi-130982

Ensembl Protein ID

VIT_07s0141g00380.t01

UniProt Accession

F6GXL7; F6GXL7_VITVI

Genbank Protein ID

CCB44703.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN594965

Gene Name

VIT_07s0141g00380

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_07s0141g00380	VIT_07s0141g00380.t01	VIT_07s0141g00380.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.20e-12	45.7	397	430

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           + v++laf +d + l+s+++Dg i+ WDlrt ++
   Q: 397  GTVRSLAFaDDgRQLLSSGGDGHIYHWDLRTRTC 430
           68*******88899***************99776 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MSLISQNILR KNRVNKTKRE DVDVPSPLEG NENEDRKELV PDILRTKKRK KEHKEEDKQL 60
EVEEEREMKK LENFLFGSLY DPVEFGKVGE EEVQTKAEKD STLFFTDRSA NSALSFYEED 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACCTCACAT TCGTCGCCGT CAATTGCTCC GGTCGCTGAC GCTGACTTCC GGAAACAGTT 60
CTCCGACTCA GTATCCCTTT TTCGATCATC CTTACCTCAT TTCTCTTTAG CTTCCTTCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

vvi:100244318

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002575	Amborella trichopoda	62.33	0.00e+00	695.00
IUUC-Aly-006512	Arabidopsis lyrata	68.61	0.00e+00	672.00
IUUC-Bra-017041	Brassica rapa	63.29	3.00e-173	600.00
IUUC-Cme-027351	Cyanidioschyzon merolae	31.59	1.00e-54	206.00
IUUC-Dre-027524	Danio rerio	31.55	6.00e-66	243.00
IUUC-Fal-036614	Ficedula albicollis	42.25	2.00e-73	269.00
IUUC-Gmo-039183	Gadus morhua	39.16	2.00e-72	265.00
IUUC-Gma-043598	Glycine max	71.43	0.00e+00	807.00
IUUC-Lch-049816	Latimeria chalumnae	42.64	4.00e-77	281.00
IUUC-Loc-051942	Lepisosteus oculatus	40.43	3.00e-70	258.00
IUUC-Meu-056300	Macropus eugenii	38.18	3.00e-62	231.00
IUUC-Mtr-058019	Medicago truncatula	70.97	0.00e+00	771.00
IUUC-Mga-060179	Meleagris gallopavo	39.08	2.00e-76	278.00
IUUC-Oba-075007	Oryza barthii	64.19	0.00e+00	633.00
IUUC-Ogl-077733	Oryza glaberrima	63.78	0.00e+00	633.00
IUUC-Olu-087644	Ostreococcus lucimarinus	26.91	2.00e-32	132.00
IUUC-Ppa-095397	Physcomitrella patens	52.57	6.00e-132	463.00
IUUC-Pop-099471	Populus trichocarpa	70.92	0.00e+00	754.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	32.87	6.00e-69	254.00
IUUC-Sly-111533	Solanum lycopersicum	74.65	0.00e+00	753.00
IUUC-Stu-112853	Solanum tuberosum	76.24	0.00e+00	769.00
IUUC-Tgu-117291	Taeniopygia guttata	41.03	1.00e-72	266.00
IUUC-Tru-118724	Takifugu rubripes	39.53	7.00e-75	273.00
IUUC-Xtr-132971	Xenopus tropicalis	40.00	3.00e-85	308.00
IUUC-Yli-134613	Yarrowia lipolytica	29.62	1.00e-56	213.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence