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Tag Content
iUUCD ID IUUC-Pan-092302
Ensembl Protein ID ENSPANP00000004403.1
UniProt Accession A0A096MWZ4; A0A096MWZ4_PAPAN
Genbank Protein ID ENSPANP00000004403
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AHZZ01068529
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSPANG00000020016.2 ENSPANT00000004730.2 ENSPANP00000004403.1
ENSPANG00000020016.2 ENSPANT00000007770.1 ENSPANP00000006170.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 5.70e-13 48.2 169 192
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    +++Q+r+D+ELA++L+++++++++
   Q: 169 MEEQLRSDEELARKLSIDINNFCE 192
    89********************97 PP
   

Organism Papio anubis
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MALPKGAVPS RSECQCGICM DILVEPVTLP CSHTLCRPCF QATVEKASLC CPFCRRRVSS 60
WARYHTRRNS LVNVDLWKVI QKHYPRECKL RASGQESEEE IADDCQPVRL LSKPGELRRE 120
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Protein Fasta Sequence



>IUUC-Pan-092302|UBD,MIU|Papio anubis
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Nucleotide Sequence
(Fasta)
ATGGCTCTAC CCAAAGGCGC CGTCCCCTCG CGGTCCGAGT GCCAGTGCGG GATCTGCATG 60
GACATCCTCG TGGAGCCCGT GACCCTGCCG TGCAGCCACA CGCTGTGCAG ACCGTGCTTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Pan-092302|UBD,MIU|Papio anubis
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 73.47 0.00e+00 688.00
IUUC-Atr-002992 Amborella trichopoda 38.67 3.00e-11 62.40
IUUC-Apl-003963 Anas platyrhynchos 43.17 5.00e-61 228.00
IUUC-Aca-004420 Anolis carolinensis 68.91 1.00e-47 184.00
IUUC-Ame-011521 Astyanax mexicanus 54.62 4.00e-38 152.00
IUUC-Bta-013002 Bos taurus 70.78 0.00e+00 682.00
IUUC-Cja-019945 Callithrix jacchus 80.42 0.00e+00 791.00
IUUC-Cfa-020533 Canis familiaris 73.82 0.00e+00 689.00
IUUC-Cpo-021643 Cavia porcellus 60.21 2.00e-141 495.00
IUUC-Csa-023638 Chlorocebus sabaeus 95.28 0.00e+00 1023.00
IUUC-Cho-024319 Choloepus hoffmanni 70.96 0.00e+00 632.00
IUUC-Cin-025679 Ciona intestinalis 40.37 1.00e-21 97.10
IUUC-Csv-026052 Ciona savignyi 37.74 3.00e-19 88.60
IUUC-Dre-028519 Danio rerio 45.50 1.00e-35 144.00
IUUC-Dno-029294 Dasypus novemcinctus 71.75 0.00e+00 677.00
IUUC-Ete-032714 Echinops telfairi 51.29 5.00e-88 318.00
IUUC-Eca-033343 Equus caballus 73.56 0.00e+00 689.00
IUUC-Eeu-034633 Erinaceus europaeus 34.72 9.00e-26 110.00
IUUC-Fca-036251 Felis catus 73.08 0.00e+00 700.00
IUUC-Fal-037048 Ficedula albicollis 45.34 2.00e-76 280.00
IUUC-Gmo-039400 Gadus morhua 46.61 2.00e-30 124.00
IUUC-Gga-040444 Gallus gallus 41.97 1.00e-65 243.00
IUUC-Gac-041735 Gasterosteus aculeatus 46.03 1.00e-34 139.00
IUUC-Gma-044332 Glycine max 33.33 2.00e-13 70.10
IUUC-Ggo-044940 Gorilla gorilla 85.25 0.00e+00 658.00
IUUC-Hsa-046424 Homo sapiens 87.24 0.00e+00 863.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 72.18 0.00e+00 657.00
IUUC-Lch-050649 Latimeria chalumnae 37.75 5.00e-50 191.00
IUUC-Loc-051847 Lepisosteus oculatus 34.85 5.00e-47 182.00
IUUC-Laf-053938 Loxodonta africana 66.61 0.00e+00 681.00
IUUC-Mcc-055360 Macaca mulatta 96.50 0.00e+00 1018.00
IUUC-Meu-056684 Macropus eugenii 49.48 7.00e-113 400.00
IUUC-Mga-059699 Meleagris gallopavo 41.95 3.00e-67 249.00
IUUC-Mmr-060779 Microcebus murinus 73.82 0.00e+00 744.00
IUUC-Mdo-062225 Monodelphis domestica 51.11 9.00e-114 404.00
IUUC-Mmu-064239 Mus musculus 63.05 1.00e-154 539.00
IUUC-Mpu-066141 Mustela putorius furo 72.87 0.00e+00 705.00
IUUC-Mlu-067945 Myotis lucifugus 72.95 0.00e+00 699.00
IUUC-Nle-069769 Nomascus leucogenys 87.41 0.00e+00 872.00
IUUC-Opr-070905 Ochotona princeps 61.08 8.00e-163 566.00
IUUC-Ont-071477 Oreochromis niloticus 51.72 8.00e-35 141.00
IUUC-Oan-073531 Ornithorhynchus anatinus 43.26 2.00e-58 219.00
IUUC-Ocu-073832 Oryctolagus cuniculus 66.67 4.00e-174 604.00
IUUC-Oin-079383 Oryza indica 36.17 5.00e-12 65.50
IUUC-Ome-081482 Oryza meridionalis 36.17 6.00e-12 65.10
IUUC-Oru-084946 Oryza rufipogon 31.48 7.00e-09 55.10
IUUC-Ola-086478 Oryzias latipes 50.00 2.00e-33 134.00
IUUC-Oga-088318 Otolemur garnettii 73.00 0.00e+00 723.00
IUUC-Oar-089647 Ovis aries 70.26 0.00e+00 667.00
IUUC-Ptr-090516 Pan troglodytes 87.59 0.00e+00 890.00
IUUC-Psi-093604 Pelodiscus sinensis 41.57 1.00e-77 283.00
IUUC-Pfo-096441 Poecilia formosa 50.00 2.00e-33 137.00
IUUC-Pab-097729 Pongo abelii 86.89 0.00e+00 874.00
IUUC-Pca-100552 Procavia capensis 62.02 2.00e-118 419.00
IUUC-Pva-102780 Pteropus vampyrus 72.74 0.00e+00 702.00
IUUC-Rno-105461 Rattus norvegicus 63.13 4.00e-157 548.00
IUUC-Sha-106809 Sarcophilus harrisii 51.81 2.00e-122 432.00
IUUC-Sly-111317 Solanum lycopersicum 36.89 9.00e-15 74.70
IUUC-Stu-112783 Solanum tuberosum 38.04 4.00e-14 72.00
IUUC-Sar-113579 Sorex araneus 59.93 1.00e-154 539.00
IUUC-Tgu-117187 Taeniopygia guttata 65.79 2.00e-46 178.00
IUUC-Tru-118182 Takifugu rubripes 50.88 4.00e-32 132.00
IUUC-Tsy-119217 Tarsius syrichta 55.79 2.00e-63 235.00
IUUC-Tni-120205 Tetraodon nigroviridis 50.00 4.00e-35 142.00
IUUC-Tvi-122557 Trichoderma virens 30.49 9.00e-05 41.60
IUUC-Tae-123092 Triticum aestivum 34.38 2.00e-11 63.50
IUUC-Tur-126688 Triticum urartu 34.04 2.00e-11 63.20
IUUC-Tbe-127622 Tupaia belangeri 70.68 0.00e+00 686.00
IUUC-Ttr-128988 Tursiops truncatus 75.39 0.00e+00 725.00
IUUC-Vpa-130302 Vicugna pacos 66.96 7.00e-124 437.00
IUUC-Xtr-132196 Xenopus tropicalis 40.63 5.00e-66 245.00
Created Date 25-Jun-2017

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