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Tag Content
iUUCD ID IUUC-Lch-050395
Ensembl Protein ID ENSLACP00000019291.2
UniProt Accession H3BBM0; H3BBM0_LATCH
Genbank Protein ID ENSLACP00000019291
Protein Name Uncharacterized protein
Genbank Nucleotide ID AFYH01045380
Gene Name SNRNP40
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSLACG00000016969.2 ENSLACT00000019424.1 ENSLACP00000019290.1
ENSLACG00000016969.2 ENSLACT00000019425.2 ENSLACP00000019291.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.20e-42 139.4 142 176
UBD/Beta-Prp 7.40e-99 330.9 113 344
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gHt+ v+++     +  l+++GsdDgt+k+WD+r+
   Q: 142  GHTSFVNSCYParRGpQLVCTGSDDGTVKLWDIRK 176
           8*******9659955588999***********886 PP
   

   UBD/Beta-Prp
   S: 21   dksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
           d+s+l+++s+d+t+ vwd +tg  +++l+gh+++v++++  ++g+ +  tgs+D+t+k+wd+++   v+t++ ++++vl+++f+ ++d 
   Q: 113  DGSMLFSASTDKTVAVWDSETGERIKRLKGHTSFVNSCYPARRGPqLVCTGSDDGTVKLWDIRKKAAVQTFQ-NTYQVLTVTFNDTSDQ 200
           6899***************************************9978889**********************.**************** PP
   S: 109  lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl....ktgkllrtltgghtdsvysls...fds 190
           ++sG+ d+ i+vwdl++++ ++   +gh+++v++++++ +g++l s + D+tvr+Wd+    + +++++ ++g+ ++  + l    +++
   Q: 201  IISGGIDNDIKVWDLRQNKLIY-SMRGHTDSVTGLSLSAEGSYLLSNAMDNTVRVWDIrpfaPKERCVKIFQGNMHNFEKNLLrcsWSP 288
           **********************.************************************************886555444443566*** PP
   S: 191  ngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsi 246
           +g  + +gs d+ v +wd  + +++++l gh   v+ v f+p++ +l+s+ssD+ +
   Q: 289  DGSKVTAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVVFHPDEPILLSASSDRRL 344
           *****************************************************987 PP
   
Organism Latimeria chalumnae
Protein Sequence
(Fasta)
MIEQVKRKGG QELVMVPNKK PRHELIAAAQ GANQQMLLHM GPPRSSSLQA PIMLLSGHEG 60
EVYCCKFHPN GSTLASSGFD RLILLWSVFG DCDNYVTLKG HSGAVMELHY NTDGSMLFSA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Lch-050395|E3,WD_repeat;UBD,Beta-Prp|Latimeria chalumnae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCGGTCCGAG GCAATCAGGC TAGTTCGCTC TCTGCGCGGC TGAGAGGGGA AAAAATTCCT 60
AAAAAAAGTC AAGAAAAATA ATAATAATAA TTATTATTAT TATTATTATT ATTATTATTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Lch-050395|E3,WD_repeat;UBD,Beta-Prp|Latimeria chalumnae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
KEGG lcm:102351311
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000138 Aegilops tauschii 55.13 6.00e-120 423.00
IUUC-Aml-001428 Ailuropoda melanoleuca 85.67 2.00e-167 581.00
IUUC-Atr-003164 Amborella trichopoda 57.75 5.00e-122 430.00
IUUC-Apl-003447 Anas platyrhynchos 91.99 8.00e-157 545.00
IUUC-Aca-004270 Anolis carolinensis 77.78 7.00e-164 569.00
IUUC-Aly-005659 Arabidopsis lyrata 62.14 8.00e-124 436.00
IUUC-Ath-006764 Arabidopsis thaliana 61.49 2.00e-123 435.00
IUUC-Acl-008324 Aspergillus clavatus 46.09 3.00e-93 334.00
IUUC-Afl-008607 Aspergillus flavus 48.99 2.00e-87 315.00
IUUC-Afu-008998 Aspergillus fumigatus 47.22 5.00e-93 334.00
IUUC-Ani-009363 Aspergillus nidulans 46.91 1.00e-93 336.00
IUUC-Ang-009513 Aspergillus niger 48.18 7.00e-84 303.00
IUUC-Aor-010237 Aspergillus oryzae 48.46 1.00e-93 335.00
IUUC-Ate-010374 Aspergillus terreus 44.20 2.00e-80 291.00
IUUC-Ame-010728 Astyanax mexicanus 85.43 9.00e-175 605.00
IUUC-Bgr-012297 Blumeria graminis 47.25 2.00e-70 258.00
IUUC-Bta-012433 Bos taurus 85.52 3.00e-174 603.00
IUUC-Bci-013763 Botrytis cinerea 47.51 5.00e-94 337.00
IUUC-Bdi-014490 Brachypodium distachyon 55.00 1.00e-118 419.00
IUUC-Bol-016479 Brassica oleracea 61.22 6.00e-124 436.00
IUUC-Bra-017219 Brassica rapa 59.88 2.00e-123 435.00
IUUC-Cel-018512 Caenorhabditis elegans 55.94 4.00e-111 394.00
IUUC-Cja-019308 Callithrix jacchus 85.52 4.00e-176 610.00
IUUC-Cfa-020998 Canis familiaris 85.79 2.00e-176 610.00
IUUC-Cpo-021580 Cavia porcellus 86.35 6.00e-175 606.00
IUUC-Cre-022859 Chlamydomonas reinhardtii 55.10 4.00e-107 380.00
IUUC-Csa-023456 Chlorocebus sabaeus 85.47 4.00e-176 610.00
IUUC-Cho-024644 Choloepus hoffmanni 93.23 3.00e-172 597.00
IUUC-Cin-025463 Ciona intestinalis 58.67 5.00e-128 450.00
IUUC-Cgl-026497 Colletotrichum gloeosporioides 46.78 3.00e-95 341.00
IUUC-Cne-026780 Cryptococcus neoformans 41.32 3.00e-66 245.00
IUUC-Dre-027671 Danio rerio 84.00 1.00e-178 618.00
IUUC-Dno-029769 Dasypus novemcinctus 86.35 3.00e-178 617.00
IUUC-Dor-030776 Dipodomys ordii 79.89 9.00e-78 283.00
IUUC-Dse-031316 Dothistroma septosporum 43.17 2.00e-83 301.00
IUUC-Dme-031756 Drosophila melanogaster 56.52 8.00e-125 439.00
IUUC-Ete-032753 Echinops telfairi 80.06 2.00e-151 528.00
IUUC-Eca-033979 Equus caballus 85.52 3.00e-174 603.00
IUUC-Eeu-034862 Erinaceus europaeus 91.37 2.00e-68 252.00
IUUC-Fca-036110 Felis catus 84.79 4.00e-146 510.00
IUUC-Fal-037648 Ficedula albicollis 84.97 3.00e-171 594.00
IUUC-Fox-037861 Fusarium oxysporum 48.22 2.00e-92 332.00
IUUC-Fso-038405 Fusarium solani 47.25 3.00e-91 328.00
IUUC-Gmo-039383 Gadus morhua 84.86 2.00e-176 611.00
IUUC-Ggr-040082 Gaeumannomyces graminis 43.53 4.00e-81 294.00
IUUC-Gga-040785 Gallus gallus 86.92 9.00e-173 598.00
IUUC-Gac-041645 Gasterosteus aculeatus 83.71 1.00e-169 588.00
IUUC-Gma-044329 Glycine max 60.52 2.00e-121 428.00
IUUC-Ggo-044800 Gorilla gorilla 77.55 2.00e-145 508.00
IUUC-Hsa-045918 Homo sapiens 85.47 4.00e-176 610.00
IUUC-Hvu-047342 Hordeum vulgare 54.84 4.00e-119 421.00
IUUC-Itr-048047 Ictidomys tridecemlineatus 82.73 1.00e-101 362.00
IUUC-Kpa-049149 Komagataella pastoris 34.64 8.00e-37 147.00
IUUC-Lpe-051275 Leersia perrieri 55.29 1.00e-119 423.00
IUUC-Loc-052666 Lepisosteus oculatus 87.54 1.00e-176 612.00
IUUC-Lma-053129 Leptosphaeria maculans 44.62 9.00e-86 310.00
IUUC-Laf-054512 Loxodonta africana 85.96 4.00e-174 603.00
IUUC-Mcc-055819 Macaca mulatta 85.47 5.00e-176 610.00
IUUC-Meu-056350 Macropus eugenii 77.62 3.00e-151 527.00
IUUC-Mor-057063 Magnaporthe oryzae 46.77 4.00e-90 324.00
IUUC-Mpo-057369 Magnaporthe poae 43.53 4.00e-81 294.00
IUUC-Mtr-058228 Medicago truncatula 57.10 3.00e-121 427.00
IUUC-Mla-059093 Melampsora laricipopulina 40.87 3.00e-69 255.00
IUUC-Mga-059719 Meleagris gallopavo 91.72 1.00e-171 595.00
IUUC-Mvi-060285 Microbotryum violaceum 38.51 3.00e-62 232.00
IUUC-Mmr-061685 Microcebus murinus 79.67 8.00e-157 546.00
IUUC-Mdo-062121 Monodelphis domestica 85.64 2.00e-174 604.00
IUUC-Mmu-063216 Mus musculus 86.91 6.00e-179 619.00
IUUC-Mac-065463 Musa acuminata 55.66 4.00e-109 387.00
IUUC-Mpu-066390 Mustela putorius furo 86.35 5.00e-178 616.00
IUUC-Mlu-066932 Myotis lucifugus 85.42 1.00e-166 578.00
IUUC-Nfi-068509 Neosartorya fischeri 45.80 3.00e-93 335.00
IUUC-Ncr-068870 Neurospora crassa 45.61 1.00e-92 332.00
IUUC-Nle-069539 Nomascus leucogenys 85.47 4.00e-176 610.00
IUUC-Opr-070555 Ochotona princeps 74.93 1.00e-154 538.00
IUUC-Ont-071490 Oreochromis niloticus 83.48 2.00e-172 597.00
IUUC-Oan-073044 Ornithorhynchus anatinus 74.45 1.00e-146 512.00
IUUC-Ocu-073764 Oryctolagus cuniculus 86.35 2.00e-178 618.00
IUUC-Oba-075704 Oryza barthii 56.79 3.00e-119 421.00
IUUC-Obr-076455 Oryza brachyantha 55.59 1.00e-119 422.00
IUUC-Ogl-077382 Oryza glaberrima 55.59 6.00e-120 423.00
IUUC-Ogu-078739 Oryza glumaepatula 56.79 2.00e-119 421.00
IUUC-Oin-079072 Oryza indica 56.79 2.00e-119 421.00
IUUC-Olo-080809 Oryza longistaminata 56.79 2.00e-119 421.00
IUUC-Ome-081677 Oryza meridionalis 56.79 6.00e-119 420.00
IUUC-Oni-082937 Oryza nivara 56.79 2.00e-119 421.00
IUUC-Opu-083510 Oryza punctata 56.79 2.00e-119 421.00
IUUC-Oru-084360 Oryza rufipogon 55.29 1.00e-119 422.00
IUUC-Osa-085640 Oryza sativa 55.29 1.00e-119 422.00
IUUC-Ola-086504 Oryzias latipes 81.46 5.00e-169 586.00
IUUC-Olu-087869 Ostreococcus lucimarinus 40.33 5.00e-62 230.00
IUUC-Oga-088773 Otolemur garnettii 85.52 1.00e-175 608.00
IUUC-Oar-089677 Ovis aries 84.81 7.00e-173 599.00
IUUC-Ptr-090724 Pan troglodytes 85.13 3.00e-167 581.00
IUUC-Pan-092683 Papio anubis 85.47 4.00e-176 610.00
IUUC-Psi-093415 Pelodiscus sinensis 92.83 2.00e-169 588.00
IUUC-Pma-094562 Petromyzon marinus 76.57 3.00e-167 580.00
IUUC-Pno-095014 Phaeosphaeria nodorum 46.77 1.00e-87 317.00
IUUC-Ppa-095822 Physcomitrella patens 57.88 8.00e-124 436.00
IUUC-Pfo-096579 Poecilia formosa 83.43 2.00e-169 587.00
IUUC-Pab-098313 Pongo abelii 85.47 4.00e-176 610.00
IUUC-Pop-099747 Populus trichocarpa 61.09 9.00e-124 436.00
IUUC-Pca-100871 Procavia capensis 79.29 2.00e-124 437.00
IUUC-Ppe-101389 Prunus persica 61.81 4.00e-124 437.00
IUUC-Pva-102468 Pteropus vampyrus 72.42 3.00e-136 477.00
IUUC-Pgr-103523 Puccinia graminis 39.32 4.00e-72 265.00
IUUC-Ptt-103930 Puccinia triticina 38.68 2.00e-71 262.00
IUUC-Pte-104299 Pyrenophora teres 46.46 2.00e-92 332.00
IUUC-Pyt-104564 Pyrenophora triticirepentis 47.08 2.00e-92 332.00
IUUC-Rno-105796 Rattus norvegicus 86.63 2.00e-178 617.00
IUUC-Sha-107191 Sarcophilus harrisii 85.64 2.00e-174 604.00
IUUC-Sja-107952 Schizosaccharomyces japonicus 35.16 6.00e-63 234.00
IUUC-Spo-108249 Schizosaccharomyces pombe 44.12 6.00e-78 283.00
IUUC-Ssl-108448 Sclerotinia sclerotiorum 48.16 1.00e-93 336.00
IUUC-Sit-110805 Setaria italica 54.41 7.00e-119 420.00
IUUC-Sly-111567 Solanum lycopersicum 62.14 2.00e-124 438.00
IUUC-Stu-112562 Solanum tuberosum 59.88 3.00e-126 444.00
IUUC-Sar-112991 Sorex araneus 92.69 1.00e-116 411.00
IUUC-Sbi-114010 Sorghum bicolor 57.28 1.00e-117 416.00
IUUC-Sre-114947 Sporisorium reilianum 42.37 9.00e-73 266.00
IUUC-Ssc-115371 Sus scrofa 85.52 3.00e-174 603.00
IUUC-Tgu-117429 Taeniopygia guttata 89.90 4.00e-168 583.00
IUUC-Tru-118081 Takifugu rubripes 81.06 8.00e-170 589.00
IUUC-Tsy-119101 Tarsius syrichta 74.37 2.00e-146 511.00
IUUC-Tni-120532 Tetraodon nigroviridis 83.14 2.00e-168 584.00
IUUC-Tca-121373 Theobroma cacao 59.94 5.00e-124 437.00
IUUC-Tre-122050 Trichoderma reesei 47.57 3.00e-91 328.00
IUUC-Tvi-122394 Trichoderma virens 46.98 1.00e-84 306.00
IUUC-Tae-124661 Triticum aestivum 55.26 4.00e-119 421.00
IUUC-Tme-126998 Tuber melanosporum 50.81 8.00e-93 333.00
IUUC-Tbe-128032 Tupaia belangeri 85.79 3.00e-176 610.00
IUUC-Ttr-129102 Tursiops truncatus 76.32 1.00e-147 515.00
IUUC-Uma-129363 Ustilago maydis 41.89 1.00e-76 280.00
IUUC-Vda-129891 Verticillium dahliae 48.25 2.00e-94 338.00
IUUC-Vpa-130827 Vicugna pacos 85.52 5.00e-174 603.00
IUUC-Vvi-131202 Vitis vinifera 57.97 5.00e-125 440.00
IUUC-Xtr-132769 Xenopus tropicalis 81.39 2.00e-166 578.00
IUUC-Xma-133147 Xiphophorus maculatus 83.14 6.00e-169 586.00
IUUC-Yli-134352 Yarrowia lipolytica 34.45 2.00e-36 146.00
IUUC-Zma-135294 Zea mays 57.28 1.00e-117 416.00
Created Date 25-Jun-2017

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