iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Osa-085396

UUCD1 version

UUC-OrS-01012

Ensembl Protein ID

OS05T0125000-01

UniProt Accession

Q6L4L4; A0A0P0WHD5; SIZ1_ORYSJ

Genbank Protein ID

AAT39226.1; BAF16431.1; BAS92058.1; BAG97182.1

Protein Name

E3 SUMO-protein ligase SIZ1

Genbank Nucleotide ID

AC134931; AP008211; AP014961; AK105290

Gene Name

SIZ1; Os05g0125000; LOC_Os05g03430; OSJNBb0079L11.3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OS05G0125000	OS05T0125000-01	OS05T0125000-01

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	23231430

Classification

Family	E-value	Score	Start	End
E3 activity/RING/PHD	1.70e-08	35.4	115	167

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCek..CrewfHpaClklsveeelpnsek...wiCpkCr 52
           + C +C +++ ++ s+++Ce+  C+ w+H +C+ ++ +++ ++ e    ++C+ Cr
   Q: 115  VRC-ICSSTMVND-SMIQCEDqrCQVWQHLNCVLIP-DKPGESAEVppvFYCELCR 167
           579.*******87.7*********************.444444333489******8 PP

Organism

Oryza sativa

Functional Description
(View)

Probable SUMO E3 ligase that may regulate Pi starvation responses.

Protein Sequence
(Fasta)

MADLVSSCKD KLAYFRIKEL KDILNQLGLP KQGKKQDLID RVLALLTDEQ GQRHHGWGRK 60
NSLTKEAVAK IVDDTYRKMQ IQCAPDLATR SHSGSDFSFR PIEEAYDSFQ PEAKVRCICS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACCACAAC GAACTACCCC CTCCTCGTCG AGCCGACGCG AGAGAGGAAA GTGGGTTGCG 60
GCTTGCTGCG CGTGTGGAGT CGCCATTCCC CAATTCGCTG CGCCGCCCGC CGGATCTCGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0436--Ligase
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR003034--SAP_dom
IPR031141--SIZ1_plant
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR004181--Znf_MIZ
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50800--SAP
PS01359--ZF_PHD_1
PS51044--ZF_SP_RING

Pfam

PF00628--PHD
PF02037--SAP
PF02891--zf-MIZ

SMART

SM00249--PHD
SM00513--SAP

Gene Ontology

GO:0005634--C:nucleus
GO:0016874--F:ligase activity
GO:0061665--F:SUMO ligase activity
GO:0008270--F:zinc ion binding
GO:0016049--P:cell growth
GO:0031668--P:cellular response to extracellular stimulus
GO:0016925--P:protein sumoylation

KEGG

osa:4337672

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000121	Aegilops tauschii	79.49	0.00e+00	1334.00
IUUC-Atr-002963	Amborella trichopoda	48.73	0.00e+00	762.00
IUUC-Aly-006507	Arabidopsis lyrata	52.24	0.00e+00	818.00
IUUC-Ath-007617	Arabidopsis thaliana	52.35	0.00e+00	845.00
IUUC-Bdi-014054	Brachypodium distachyon	78.77	0.00e+00	1385.00
IUUC-Bol-015575	Brassica oleracea	49.49	0.00e+00	803.00
IUUC-Bra-017615	Brassica rapa	48.48	0.00e+00	756.00
IUUC-Cho-024816	Choloepus hoffmanni	36.54	1.00e-16	80.50
IUUC-Dre-028668	Danio rerio	26.62	3.00e-20	93.20
IUUC-Dse-031254	Dothistroma septosporum	33.96	9.00e-16	77.40
IUUC-Fox-038010	Fusarium oxysporum	32.52	4.00e-10	58.50
IUUC-Gma-043219	Glycine max	51.23	0.00e+00	837.00
IUUC-Hvu-047670	Hordeum vulgare	76.32	0.00e+00	873.00
IUUC-Lpe-050930	Leersia perrieri	90.27	0.00e+00	1577.00
IUUC-Mcc-055469	Macaca mulatta	27.70	9.00e-23	101.00
IUUC-Mtr-058191	Medicago truncatula	51.10	0.00e+00	800.00
IUUC-Mvi-060421	Microbotryum violaceum	27.17	3.00e-19	89.70
IUUC-Mac-064545	Musa acuminata	57.42	0.00e+00	969.00
IUUC-Mpu-066494	Mustela putorius furo	26.72	4.00e-16	79.00
IUUC-Nfi-068603	Neosartorya fischeri	26.51	5.00e-16	79.30
IUUC-Oba-075465	Oryza barthii	99.53	0.00e+00	1733.00
IUUC-Obr-076593	Oryza brachyantha	90.64	0.00e+00	1612.00
IUUC-Ogl-076986	Oryza glaberrima	99.54	0.00e+00	1775.00
IUUC-Ogu-078320	Oryza glumaepatula	99.66	0.00e+00	1178.00
IUUC-Oin-079468	Oryza indica	99.88	0.00e+00	1734.00
IUUC-Olo-080754	Oryza longistaminata	99.28	0.00e+00	1675.00
IUUC-Oni-082630	Oryza nivara	99.77	0.00e+00	1758.00
IUUC-Opu-083453	Oryza punctata	98.38	0.00e+00	1729.00
IUUC-Oru-084397	Oryza rufipogon	99.88	0.00e+00	1759.00
IUUC-Ppa-095158	Physcomitrella patens	48.41	5.00e-142	497.00
IUUC-Pop-099885	Populus trichocarpa	50.43	0.00e+00	822.00
IUUC-Ppe-101666	Prunus persica	53.32	0.00e+00	886.00
IUUC-Smo-109174	Selaginella moellendorffii	52.86	7.00e-141	493.00
IUUC-Sit-110164	Setaria italica	78.69	0.00e+00	1308.00
IUUC-Sly-111822	Solanum lycopersicum	51.66	0.00e+00	845.00
IUUC-Stu-112120	Solanum tuberosum	45.66	4.00e-128	450.00
IUUC-Sbi-114516	Sorghum bicolor	77.34	0.00e+00	1068.00
IUUC-Tsy-119019	Tarsius syrichta	28.96	6.00e-17	81.30
IUUC-Tca-121168	Theobroma cacao	51.69	0.00e+00	867.00
IUUC-Tae-123882	Triticum aestivum	78.91	0.00e+00	1393.00
IUUC-Tur-126429	Triticum urartu	75.60	0.00e+00	952.00
IUUC-Vpa-130725	Vicugna pacos	28.51	5.00e-17	81.30
IUUC-Vvi-131637	Vitis vinifera	52.58	0.00e+00	867.00
IUUC-Zma-134930	Zea mays	77.38	0.00e+00	1389.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence