iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099925

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_645875; POPTR_0003s05930g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s05930	POPTR_0003s05930.1	POPTR_0003s05930.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-22	79.9	113	146

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           gH+++v++l f ++   l+s+s+D+t+++WD+ +
   Q: 113  GHAGPVHGLTFsPSnAVLASSSWDKTVRLWDVFE 146
           8**********9554789*************855 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSCECVCIFL SQVWTVSSGF CFVTFSEHTN AVTALHFMAN NHCLLSASLD GTVRAWDLFR 60
YRNFRTFTTP SSRQFVSLAA DQSGEVICAG TLDSFEIFVW SMKTGRLLDV LSGHAGPVHG 120

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Nucleotide Sequence
(Fasta)

ATGTCATGTG AATGTGTTTG TATTTTCTTG TCACAGGTGT GGACCGTTTC ATCTGGCTTT 60
TGCTTTGTAA CATTCTCAGA GCACACAAAT GCTGTGACCG CGCTTCATTT TATGGCAAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0732--Signal
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR027145--PWP2
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000028--P:ribosomal small subunit assembly

KEGG

pop:POPTR_0003s05930g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011648	Astyanax mexicanus	57.58	1.00e-28	117.00
IUUC-Sha-107264	Sarcophilus harrisii	40.90	2.00e-86	312.00
IUUC-Ssc-115931	Sus scrofa	44.10	7.00e-93	333.00
IUUC-Tsy-119401	Tarsius syrichta	47.07	5.00e-121	428.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence